PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G064250.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 176aa MW: 18498.3 Da PI: 11.0408 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.7 | 4.3e-08 | 24 | 68 | 3 | 51 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 +a +e Er RR+++ ++eL lP + ++ s a iLe A+ Y+ Sobic.008G064250.1.p 24 EASPEPERARRRHMSRLYAELGAQLPGL----PPRASRARILEDAIAYV 68 677899*********************6....389*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.21E-7 | 20 | 76 | No hit | No description |
PROSITE profile | PS50888 | 12.201 | 21 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.72E-10 | 21 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-5 | 24 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-4 | 27 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.1E-7 | 30 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 5.83E-5 | 110 | 171 | No hit | No description |
CDD | cd04873 | 0.00503 | 119 | 174 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MAQAQDQEHP LALSLPPPAK AKEEASPEPE RARRRHMSRL YAELGAQLPG LPPRASRARI 60 LEDAIAYVGV LRATVAGLEA RAAFAKAAAT ATATPASAAE VVVAGKASCF AVRLPVARRR 120 GALTRVLEVF RRHGVPVLEA TVTSDGGEAA VTVTTAPVPP RFLQRIQEDI RSSIA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G064250.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021301576.1 | 1e-118 | transcription factor bHLH95-like isoform X2 | ||||
TrEMBL | A0A1Z5R663 | 1e-116 | A0A1Z5R663_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Eb01569.1.p | 6e-53 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9141 | 19 | 31 | Representative plant | OGRP12068 | 2 | 3 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G064250.1.p |