PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.008G059632.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 490aa MW: 57381.9 Da PI: 8.3788

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.008G059632.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.9	1.8e-09	6	77	1	48
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk........................t 48 ++Yn+YAk++GFs+r+++s++s ++e k +fvC+keg+ ++++ + Sobic.008G059632.1.p 6 EYYNSYAKRTGFSIRTNTSRRSAITREKQKVQFVCNKEGFGRKRRVVaqlvdgitcysdndeaeeedtaqeE 77 69**************************************99987767788888888877777766664431 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-7	6	76	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.371	345	381	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.3E-4	353	377	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0026	356	383	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MDEAREYYNS YAKRTGFSIR TNTSRRSAIT REKQKVQFVC NKEGFGRKRR VVAQLVDGIT 60 CYSDNDEAEE EDTAQEEEDE QVEKRKKFDG CKKRKREKMV YTKYKARMSS LKKFLRSHRG 120 IPKQENDFIV LLHGCNLSTG RIMQLMSEFY GSAQLVPYDG KQVSNFRSTI HKTEKFKDIA 180 LKEEDPEFFY KIKLDDNHRV ENMFWVDSAT RRAYKEKYGL EDNEHFQHLY HIRQSFIPAY 240 YMHSFFPVLQ STQRSEGFNA LLKKYVNPNL SVLQFVRQYQ KIQEKCLVAQ DGQDFRTDEN 300 ERRRWSRFSK EFEKTAEYDV KPVGQFQYWL EPNNSFVFGY GKRNYLVTAI EEDESYCCEC 360 SKFDRDGIIC CHIMRVMVRM GVKLIPERYI LKRWTQQAIA SDTNQVQNVN APVELVACGM 420 PLTTIAVEGC TNDENYAILE KHIKEMRSEF EEIKKRTMAN RQNTSGTEGG ATEGAQNDVP 480 KAAPDRELG*

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MDEAREYYNS YAKRTGFSIR TNTSRRSAIT REKQKVQFVC NKEGFGRKRR VVAQLVDGIT  60
CYSDNDEAEE EDTAQEEEDE QVEKRKKFDG CKKRKREKMV YTKYKARMSS LKKFLRSHRG  120
IPKQENDFIV LLHGCNLSTG RIMQLMSEFY GSAQLVPYDG KQVSNFRSTI HKTEKFKDIA  180
LKEEDPEFFY KIKLDDNHRV ENMFWVDSAT RRAYKEKYGL EDNEHFQHLY HIRQSFIPAY  240
YMHSFFPVLQ STQRSEGFNA LLKKYVNPNL SVLQFVRQYQ KIQEKCLVAQ DGQDFRTDEN  300
ERRRWSRFSK EFEKTAEYDV KPVGQFQYWL EPNNSFVFGY GKRNYLVTAI EEDESYCCEC  360
SKFDRDGIIC CHIMRVMVRM GVKLIPERYI LKRWTQQAIA SDTNQVQNVN APVELVACGM  420
PLTTIAVEGC TNDENYAILE KHIKEMRSEF EEIKKRTMAN RQNTSGTEGG ATEGAQNDVP  480
KAAPDRELG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	98	KKRKREKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.008G059632.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021321689.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A1Z5R4Y6	0.0	A0A1Z5R4Y6_SORBI; Uncharacterized protein
STRING	Sb03g026060.1	0.0	(Sorghum bicolor)
STRING	Sb04g002600.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2639	10	18
Representative plant	OGRP10982	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	4e-19	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Sobic.008G059632.1.p