PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.008G037900.2.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 484aa MW: 52724.8 Da PI: 6.628

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.008G037900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.8	8.7e-12	179	207	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le Sobic.008G037900.2.p 179 KTIRRLAQNREAARKSRLRKKAYIQQLES 207 7789***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.9E-9	175	219	No hit	No description
SMART	SM00338	4.5E-6	175	238	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.829	177	221	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.88E-21	179	231	No hit	No description
Pfam	PF00170	3.6E-9	179	208	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.81E-7	179	213	No hit	No description
PROSITE pattern	PS00036	0	182	197	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.4E-29	259	332	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MGDTSSSSHS RQDPCALGYG FHGAIANSIP ANFFDQDGGA YFGELEEAFM HQVASLARTQ 60 QAATTSIAHH GDIKPFPTAA TVTAATTTAR PPPTLDIFPA WPMRSLHTPK EGSNVTADST 120 DDSESSSKNN SNHSDQHGAA ADMQSQFGQG SQQQQQQQLQ HKNMATSFTP RTGKTPDPKT 180 IRRLAQNREA ARKSRLRKKA YIQQLESSKL KLAQIEQDMQ RAHSQGIFLG GAPGANSSSG 240 AAMFDVEYAR WLDDHGRRMA ELHGALHAHL PDGDLRAIVD DTLTHHDELF QLKASAAKSD 300 VFHLITGVWT TPAERCFLWM GGFRPSDLVK TLLPQLDPLT EQQLVGICNL QQSSQQAEEA 360 LSQGLDQLHQ SLADTMAGGS LIDDTNMSFM GQMALALGKL SNLEGFVIQA DNLRQQTLHQ 420 MHRILTVRQA ARCFLAIGEY HNRLRALSSL WVSRPREILG ADEGNCGEIS IAAQASQSQF 480 SSF*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MGDTSSSSHS RQDPCALGYG FHGAIANSIP ANFFDQDGGA YFGELEEAFM HQVASLARTQ  60
QAATTSIAHH GDIKPFPTAA TVTAATTTAR PPPTLDIFPA WPMRSLHTPK EGSNVTADST  120
DDSESSSKNN SNHSDQHGAA ADMQSQFGQG SQQQQQQQLQ HKNMATSFTP RTGKTPDPKT  180
IRRLAQNREA ARKSRLRKKA YIQQLESSKL KLAQIEQDMQ RAHSQGIFLG GAPGANSSSG  240
AAMFDVEYAR WLDDHGRRMA ELHGALHAHL PDGDLRAIVD DTLTHHDELF QLKASAAKSD  300
VFHLITGVWT TPAERCFLWM GGFRPSDLVK TLLPQLDPLT EQQLVGICNL QQSSQQAEEA  360
LSQGLDQLHQ SLADTMAGGS LIDDTNMSFM GQMALALGKL SNLEGFVIQA DNLRQQTLHQ  420
MHRILTVRQA ARCFLAIGEY HNRLRALSSL WVSRPREILG ADEGNCGEIS IAAQASQSQF  480
SSF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.7164	0.0	callus\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.008G037900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF111321	0.0	KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021302322.1	0.0	transcription factor TGAL4 isoform X4
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A1B6PB72	0.0	A0A1B6PB72_SORBI; Uncharacterized protein
STRING	Pavir.Hb01807.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70
Representative plant	OGRP6496	11	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-129	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sobic.008G037900.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]