PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G225600.1.p
Common NameSb07g029070, SORBIDRAFT_07g029070
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 317aa    MW: 35390.3 Da    PI: 5.5269
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G225600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.42.2e-1924110286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                           W++ e+++Li+a++e++++lrrg+lk+++Weev++ +             +++ +qC++k+e+l+kry+++ ++         s +pyf
  Sobic.007G225600.1.p  24 WSHVETMHLIDAYEERWTALRRGQLKAHQWEEVAAEVvarcaatpGVVAQRKTGTQCRHKLEKLRKRYRNEGARPVT------SLWPYF 106
                           *************************************9*9997655555578*****************98777764......68**** PP

              trihelix  83 dqle 86 
                           ++++
  Sobic.007G225600.1.p 107 RRMD 110
                           ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-1922112No hitNo description
SMARTSM005954.7E-531117IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MMADDPPRRP PSALARKSAP AQPWSHVETM HLIDAYEERW TALRRGQLKA HQWEEVAAEV  60
VARCAATPGV VAQRKTGTQC RHKLEKLRKR YRNEGARPVT SLWPYFRRMD RLERGPLAAY  120
PAAAGSPPAA DGDEEDEEEE EEEEEEEDAQ EEEEEEEELV PRNNHTRSIN GIIREFGTGL  180
APRHPQLQLH APPSSITPST APPRKRVAYE AFQAKAAAAA KAKDDDDEAV EMAYGGGSSG  240
RGAGAQLSAV LRDFGEGVMR LERRRMEVQW EIERGWQEAD ARHARMLQDA QRQLRDTVAA  300
ACALPPKKAR RDHGDS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.157230.0ovary| panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G225600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0404530.0BT040453.1 Zea mays full-length cDNA clone ZM_BFc0095C18 mRNA, complete cds.
GenBankEU9543250.0EU954325.1 Zea mays clone 1462507 hypothetical protein mRNA, complete cds.
GenBankKJ7278530.0KJ727853.1 Zea mays clone pUT5898 trihelix transcription factor (THX8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445984.10.0trihelix transcription factor ASIL1
TrEMBLC5YJQ30.0C5YJQ3_SORBI; Uncharacterized protein
STRINGSb07g029070.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100782933
Representative plantOGRP1302445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.15e-19Trihelix family protein