PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G183200.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 271aa    MW: 28987.9 Da    PI: 7.5916
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G183200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-13101145554
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           h e+Er+RRd++N  f eLr  +P+       +++Ka++L  A+ YI +L
  Sobic.007G183200.2.p 101 HVEAERQRRDKLNRLFCELRAAVPTV-----SRMDKASVLADATSYIAQL 145
                           899**********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-1795157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.38996145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16101158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.12E-14101150No hitNo description
PfamPF000104.5E-11101145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-13102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDELVFPASS SSCPSPASFS TAGHHQEHEF VPCDFLEGWL GGDDDWPDLD EPPSGVTWGG  60
EGSRSLRNDH HLSGEPPATA LKRRGRKPAS RNNTNSPALC HVEAERQRRD KLNRLFCELR  120
AAVPTVSRMD KASVLADATS YIAQLRQRVQ QLEAEAKKKA AAAAAALTTV VAPFSHSFII  180
SGSGQQLGEK LEVRMVGTEA AALRLTTATA AVRHAPARLM LALQSLDLPH ACVCLVGGVT  240
VQDAVVEVPA ALRDDRALRA ALLHRLLRTG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1599155763Transcription factor MYC2
5gnj_B4e-1599155763Transcription factor MYC2
5gnj_E4e-1599155763Transcription factor MYC2
5gnj_F4e-1599155763Transcription factor MYC2
5gnj_G4e-1599155763Transcription factor MYC2
5gnj_I4e-1599155763Transcription factor MYC2
5gnj_M4e-1599155763Transcription factor MYC2
5gnj_N4e-1599155763Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G183200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444646.11e-154transcription factor bHLH14
TrEMBLA0A1Z5RAJ40.0A0A1Z5RAJ4_SORBI; Uncharacterized protein
STRINGSb07g025340.11e-154(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.11e-22bHLH family protein