PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G159300.1.p | ||||||||
Common Name | Sb07g023280, SORBIDRAFT_07g023280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 26331.5 Da PI: 8.7574 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.6 | 1.1e-13 | 31 | 77 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+Er+RR+riN +++Lr+l+P+a +++Ka+ L ++v+++++L Sobic.007G159300.1.p 31 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRHVREL 77 79*************************9.....7***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.75E-11 | 26 | 80 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.9E-14 | 27 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-14 | 27 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.196 | 28 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-11 | 31 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-12 | 34 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MVVTDDGVVE GRGLAEGERL TPALRKKERG RSHSEAERKR RQRINAHLAT LRTLVPSASR 60 MDKAALLGEV VRHVRELRAK ASDAAAGVGV GVIPGEGDEV GAEEEDDDYW RQHGRRHFGA 120 DDDDSLPPPR RVVRAWVCCD DRPGLLSDLG RAVRSVRNAR PVRVEIATVG GRTRSVLELD 180 VSGDDGDDDN AATAAAAGNG RAVALSTLRA AMRAVLLNRD EHVIAAGDGY KRPRFSSAQI 240 AKVQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 40 | RKKERGRSHSEAERKRR |
2 | 36 | 41 | ERKRRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G159300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444528.1 | 1e-171 | transcription factor bHLH30 | ||||
TrEMBL | C5YMN0 | 1e-170 | C5YMN0_SORBI; Uncharacterized protein | ||||
STRING | Sb07g023280.1 | 1e-170 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4114 | 35 | 69 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25710.1 | 5e-19 | basic helix-loop-helix 32 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G159300.1.p |
Entrez Gene | 8083560 |