PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G155300.1.p
Common NameSb07g022920, SORBIDRAFT_07g022920
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 270aa    MW: 28710 Da    PI: 7.9988
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G155300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08187227954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Sobic.007G155300.1.p 187 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 227
                           699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-14183238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12183237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-6188227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.03E-6201232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDFDMLNSHP EAQLELMNAM LQLEQLTAFP LPDHHGAMMM VPSSPPSPPG MQQAASHHHH  60
FSSVPHHMSS GANNSGRGGG GGVYNDHHHQ YSQVVTADVS SCNGSARRSD SEYVAHAQQD  120
DHAAGGGGGN YSSGESGGGT AAVGSSAMRE MIFRVAALQP VNIDPEMVRP PKRRNVRIST  180
DPQSVAARMR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKTQ VQSLERAAAA  240
SGRRPAVDNG AAGAGAASYS GRMNGGHQW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173RPPKRR
2187192RMRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G155300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269731e-154KJ726973.1 Zea mays clone pUT3674 bHLH transcription factor (bHLH113) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445629.10.0transcription factor bHLH69
TrEMBLC5YM980.0C5YM98_SORBI; Uncharacterized protein
STRINGSb07g022920.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.11e-37bHLH family protein