PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G152300.1.p | ||||||||
Common Name | Sb07g022620, SORBIDRAFT_07g022620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 383aa MW: 39140.7 Da PI: 8.0773 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.6e-18 | 196 | 250 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Sobic.007G152300.1.p 196 RKKLRLSKEQSAFLEESFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTK 250 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.7 | 4.9e-41 | 196 | 286 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq+++LEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr Sobic.007G152300.1.p 196 RKKLRLSKEQSAFLEESFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELR- 283 69*************************************************************************************9. PP HD-ZIP_I/II 90 elk 92 +lk Sobic.007G152300.1.p 284 ALK 286 555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-18 | 180 | 246 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.48E-18 | 184 | 253 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.248 | 192 | 252 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.9E-16 | 194 | 256 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.24E-16 | 196 | 253 | No hit | No description |
Pfam | PF00046 | 9.8E-16 | 196 | 250 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 227 | 250 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 4.4E-25 | 252 | 295 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.3E-10 | 252 | 286 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MELRLSLGEA AVPDAGRAAV PELGLGLGVG IGASAAAGSG RREEGGTGNR AAPGTGTGTG 60 TRWWAAPATP EPAAVRLSLV SSSLGLQWPP SDAGICHAGR AEAPAARGFD VNRPAPSSSA 120 VAASALLALE DDEDDPGAAA ALSSSPNDSA GSFPLDLGGG PHAHHAEGGA AAQAAGGGGE 180 RSSSRASDED DGASARKKLR LSKEQSAFLE ESFKEHSTLN PKQKAALAKQ LNLRPRQVEV 240 WFQNRRARTK LKQTEVDCEY LKRCCETLTE ENRRLHKELA ELRALKAAPP FFMRLPATTL 300 SMCPSCERVA SGPNPAASTS APVSLSSSSP PATATATAVA APVVRGEHRP PSSFAALFAA 360 TRSFTLASQP RPPAPAPASN CL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 244 | 252 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.4024 | 1e-99 | callus| embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G152300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241196 | 1e-174 | AK241196.1 Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021320313.1 | 0.0 | homeobox-leucine zipper protein HOX27 | ||||
Swissprot | Q6YPD0 | 1e-118 | HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27 | ||||
TrEMBL | A0A1B6PHX6 | 0.0 | A0A1B6PHX6_SORBI; Uncharacterized protein | ||||
STRING | Sb07g022620.1 | 1e-176 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5209 | 33 | 63 | Representative plant | OGRP196 | 16 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 6e-58 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G152300.1.p |
Entrez Gene | 8083514 |