PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.007G077100.1.p | ||||||||
Common Name | Sb07g006195, SORBIDRAFT_07g006195 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 219aa MW: 22393.2 Da PI: 8.2032 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.8 | 1.8e-20 | 27 | 77 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 + +GVr ++ +gr++AeIrd + r +r++lg+f+t+e+Aa+a++aa+++l+g+ Sobic.007G077100.1.p 27 RLRGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTPEQAARAYDAAARRLRGP 77 679******.**********44.....55**************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.20E-16 | 26 | 86 | No hit | No description |
Pfam | PF00847 | 4.3E-14 | 26 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-21 | 27 | 86 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.169 | 27 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-32 | 27 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 28 | 39 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.2E-30 | 29 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MAPKRSSSPA GSSGSGVFEA AAAEQPRLRG VRKRPWGRYA AEIRDPVRKA RVWLGTFDTP 60 EQAARAYDAA ARRLRGPGAT TNYPQSSEPM APAEAPARSA SGSGSAVVHE SSLSSSSSSS 120 SSCSLLPESV TVAVTAPAPS LDLSLALPAS ASVAKTYQLF MDPTPALLPF LLPKSEEERS 180 CSGSPSSSSV VFDAAPPPVG LGLGLDLNLA LLPAEMVV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-21 | 12 | 86 | 3 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sbi.400 | 0.0 | ovary |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.007G077100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM493723 | 6e-96 | AM493723.1 Saccharum officinarum mRNA for ethylene responsive transcription factor (ERF3 gene). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002445220.1 | 1e-149 | ethylene-responsive transcription factor 11 | ||||
TrEMBL | C5YIV7 | 1e-148 | C5YIV7_SORBI; Uncharacterized protein | ||||
STRING | Sb07g006195.1 | 1e-149 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14446 | 10 | 25 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28370.1 | 2e-19 | ERF domain protein 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.007G077100.1.p |
Entrez Gene | 8085844 |