PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G051800.1.p
Common NameSb07g004190, SORBIDRAFT_07g004190
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 289aa    MW: 31252.1 Da    PI: 4.4279
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G051800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-1285130555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           + ++Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI  Lq
  Sobic.007G051800.1.p  85 NIIMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIEALQ 130
                           5689*********************7.....7*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.01880129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-1784144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.95E-1384134No hitNo description
PfamPF000102.3E-1085130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-1586135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1686145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEMGDSFEYY WETQQYLESE ELSIYLGTQD DALSCYDSSS PDGSISNNSS WAAPAGTVAT  60
AAAGKEEEGP GGAGGGGAVA AANKNIIMER DRRRKLNEKL YALRSVVPNI TKMDKASIIK  120
DAIEYIEALQ AEERRMLQEV RALEEADAAE ERCEYDEYGE EGALLQAADR GRKKMKRTQS  180
VPSSSVPAAA APVEVLELRV SEVGDRVLVV NVTCGKGRDA MARVCRAVEE LRLRVITASI  240
TSVAGCLMHT IFVEVDLDEA NRIQMKHMIE AALSQLDAAG SPPSAMSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170178GRKKMKRTQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.86460.0leaf| ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G051800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0852541e-103BT085254.1 Zea mays full-length cDNA clone ZM_BFb0344G23 mRNA, complete cds.
GenBankEU9697841e-103EU969784.1 Zea mays clone 335640 DNA binding like mRNA, complete cds.
GenBankKJ7279671e-103KJ727967.1 Zea mays clone pUT6080 bHLH transcription factor (bHLH116) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445107.10.0transcription factor bHLH35
TrEMBLC5YHE60.0C5YHE6_SORBI; Uncharacterized protein
STRINGSb07g004190.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Representative plantOGRP27531332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.19e-42bHLH family protein