PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.007G025200.1.p

Common Name

Sb07g002200, SORBIDRAFT_07g002200

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 276aa MW: 29689.9 Da PI: 10.309

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.007G025200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.6	2.3e-13	37	88	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 r+ ++Er+RR+r+++ f+eL +l+P+ ++K ++K + +e+++ YI+sL+ Sobic.007G025200.1.p 37 RMRRIAERKRRSRLRNHFSELESLVPNvT---ENEKiNDKGDLVEQTIAYIQSLE 88 56789********************77...88888**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.06E-13	31	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.98	34	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.3E-11	38	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-12	39	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-8	40	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.94E-11	41	89	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MASSTTIPAL EENTNAVVVS AGNAADNKEP RKSRRNRMRR IAERKRRSRL RNHFSELESL 60 VPNVTENEKI NDKGDLVEQT IAYIQSLERT KAMLEKRKQQ LALARQVAAS SSSAPPQTAR 120 GKMAPAPVAP LLQPLAAAVP VSAAADDVPQ PQPLVQQPLA VAAAVPPPQP LPVAAAGQGG 180 FQTWSWPNLV LNVSNNNAYI NVCVPRHLGM QNMVMVLSVL NNHGIDVVTT QVDADAARSV 240 LNFYTRVTRM GGGNPSSEEV YKLATSEILL LLNTN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.007G025200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008650124.2	3e-61	transcription factor bHLH95
TrEMBL	C5YMJ4	0.0	C5YMJ4_SORBI; Uncharacterized protein
STRING	Sb07g002200.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2005	36	91
Representative plant	OGRP1226	15	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28160.1	1e-07	FER-like regulator of iron uptake

Link Out ? help Back to Top
Phytozome	Sobic.007G025200.1.p
Entrez Gene	8074053