PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.007G008500.2.p | ||||||||
Common Name | Sb07g000900, SORBIDRAFT_07g000900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 349aa MW: 37411.2 Da PI: 7.051 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29 | 2e-09 | 208 | 248 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++YIk L Sobic.007G008500.2.p 208 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 248 699*****************87.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.555 | 199 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.68E-16 | 204 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-15 | 205 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-14 | 205 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.2E-7 | 209 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.54E-7 | 222 | 253 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MDNITHNSSS SSSWDLDMSL GSHHHPLLFD SHHPNPGPPP PPPLPFHLSS SHPAHHHPPP 60 HPAHHHHHHP GLDPSPSSSL FPQPHHHHHH HRLHHLGLDL DPASHSHGHH RHHEFGEQQE 120 PGGGGGGGGG EEHQEEMRQQ QQHEAGGGGQ EDRGGGGAAE DVEEELGAMK EMMYRIAAMQ 180 PVDIDPATIK KPRRRNVRIS EDPQSVAARH RRERISERIR ILQRLVPGGT KMDTASMLDE 240 AIRYIKFLKR QVQELQHQPS PTQQQYPASA GAGPSTSVVG VAAPGRPGGG PPFLPLGPGP 300 LIDWAGLVRP VDIHGPTSSS SSSSMGGAHA ALGFGFSSAG GQSSHGMH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.007G008500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065018 | 0.0 | BT065018.1 Zea mays full-length cDNA clone ZM_BFc0135I21 mRNA, complete cds. | |||
GenBank | EU974197 | 0.0 | EU974197.1 Zea mays clone 442660 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444887.1 | 0.0 | transcription factor bHLH7 | ||||
TrEMBL | C5YLU6 | 0.0 | C5YLU6_SORBI; Uncharacterized protein | ||||
STRING | Sb07g000900.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9051 | 32 | 46 | Representative plant | OGRP761 | 15 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09750.1 | 7e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.007G008500.2.p |
Entrez Gene | 8068530 |