PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G267900.1.p | ||||||||
Common Name | Dof21, Sb06g033010, SORBIDRAFT_06g033010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | Dof | ||||||||
Protein Properties | Length: 225aa MW: 23265.7 Da PI: 7.7729 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 113.5 | 9.2e-36 | 51 | 107 | 2 | 58 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 ++++l+cprC stntkfCyynnys++qPr+fC+aCrryWt+GG+lr+vPvGg++r++ Sobic.006G267900.1.p 51 QQQQLECPRCRSTNTKFCYYNNYSTAQPRHFCRACRRYWTHGGTLRDVPVGGASRRS 107 6899***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 7.6E-33 | 53 | 107 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 7.0E-21 | 55 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.894 | 55 | 109 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 57 | 93 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MAPAASILSA TAAAAGASKR PADSDAELSL DSSALQQQGD EAVRKGRQTR QQQQLECPRC 60 RSTNTKFCYY NNYSTAQPRH FCRACRRYWT HGGTLRDVPV GGASRRSSGG GGKRRRVSAE 120 PSSAASSSPP PLPAASLADA CLPDLTSAFP FLSDGSFFPQ FDVGSGVALA PAAFSSSWQS 180 VVPDFYDGLA PWDDGAAAGT AAGGFVGAWG DIAGLDLSWT PPGN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 116 | KRRRV |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00593 | DAP | Transfer from AT5G66940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G267900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC582414 | 0.0 | KC582414.1 Sorghum bicolor dof21 protein (dof21) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448779.1 | 1e-159 | dof zinc finger protein DOF5.8 | ||||
TrEMBL | C5YAJ6 | 1e-158 | C5YAJ6_SORBI; Dof-type zinc finger protein 21 | ||||
STRING | Sb06g033010.1 | 1e-159 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14047 | 24 | 27 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66940.1 | 4e-28 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G267900.1.p |
Entrez Gene | 8076466 |
Publications ? help Back to Top | |||
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