PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G256500.2.p | ||||||||
Common Name | Sb06g032000, SORBIDRAFT_06g032000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C3H | ||||||||
Protein Properties | Length: 234aa MW: 24286.3 Da PI: 9.7324 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.3 | 3.1e-09 | 33 | 58 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + t Ck+Gd+C+FaH++ Sobic.006G256500.2.p 33 KTRMCTKYNTTEGCKFGDKCHFAHSE 58 9***********************95 PP | |||||||
2 | zf-CCCH | 37.4 | 4.4e-12 | 200 | 225 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC +f + G C +GdrC+FaHg+ Sobic.006G256500.2.p 200 YKTKLCENFVK-GACTFGDRCHFAHGE 225 9**********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-14 | 30 | 63 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-8 | 30 | 62 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.051 | 31 | 58 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 31 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-6 | 33 | 58 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.9E-14 | 92 | 170 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 3.1E-11 | 99 | 169 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 1.2E-15 | 99 | 169 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 15.179 | 100 | 164 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.20E-14 | 102 | 164 | No hit | No description |
Pfam | PF00013 | 4.1E-11 | 102 | 165 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-14 | 198 | 229 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-9 | 198 | 229 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-8 | 199 | 225 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.103 | 199 | 226 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 200 | 225 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MLNLGSPAVS APSRTHVDHA ALTGASHQAS MGKTRMCTKY NTTEGCKFGD KCHFAHSERE 60 LGKPAYMSHE GPPMGGRYGG RPEPLQQASM GPPAGNFGAS ATAKISVDAS LAGGIIGKGG 120 VNTKQISRVT GVKLSIRDHE SNPSQKNIEL EGNFDQIKQA SDMVRDLIAT ISASMPAKNL 180 SASAAPAGGR GGGLGGRSNY KTKLCENFVK GACTFGDRCH FAHGETEQRR GAA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.20604 | 0.0 | embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G256500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974452 | 0.0 | EU974452.1 Zea mays clone 449633 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002447282.1 | 1e-171 | zinc finger CCCH domain-containing protein 31 | ||||
Swissprot | Q7XPK1 | 1e-103 | C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31 | ||||
TrEMBL | A0A1B6PNX0 | 1e-172 | A0A1B6PNX0_SORBI; Uncharacterized protein | ||||
STRING | Sb06g032000.1 | 1e-171 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 6e-52 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G256500.2.p |
Entrez Gene | 8070284 |
Publications ? help Back to Top | |||
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