PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G180300.2.p
Common NameSb06g025490, SORBIDRAFT_06g025490
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 263aa    MW: 28646.8 Da    PI: 7.8461
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G180300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.00041551861854
                           HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +++  L++++ +      +K + +++L +++eYIk L
  Sobic.006G180300.2.p 155 EKITALQQIVSPF-----GKTDTSSVLFETIEYIKFL 186
                           5777888888887.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.566137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-7152191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-8152200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.24E-4155191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGCCMPCYDH EGKPADDSQR QRQGFGAPTA AFLQQTVPSR VELQSVVLGY SGMLSERLEP  60
SSFGVGSLPD DGSFSDYNTN RSSADFMSSN SNRQEQDIRQ AGMGSSSSGS GAATSAATRR  120
KSQEGIGGNT KKSKQEVSHK ASPTKAQAPK VKLGEKITAL QQIVSPFGKT DTSSVLFETI  180
EYIKFLHEQI RLFSEPYMTK STYKGHIRRR GEEKEEETGT GHHDLRGRGL CLVPVSLTSQ  240
AYHDDTTLPD CWAPAYRSCL YP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G180300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9650791e-137EU965079.1 Zea mays clone 283642 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448344.20.0uncharacterized protein LOC8057588
TrEMBLA0A1Z5REH00.0A0A1Z5REH0_SORBI; Uncharacterized protein
STRINGSb06g025490.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1425244
Representative plantOGRP1071524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.11e-30bHLH family protein