PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G133700.1.p | ||||||||
Common Name | Sb06g021350, SORBIDRAFT_06g021350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 379aa MW: 39813.1 Da PI: 6.0486 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.8 | 1.5e-10 | 187 | 245 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l +l+ l+se+ Sobic.006G133700.1.p 187 KRAKRILANRQSAARSKERKMRYIAELERKVQNLQSEATTLSAQLAMLQRDTTGLTSEN 245 9***********************************************99999888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.4E-17 | 183 | 247 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 7.2E-8 | 185 | 236 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.174 | 185 | 248 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.85E-11 | 187 | 242 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.9E-11 | 187 | 242 | No hit | No description |
CDD | cd14703 | 6.74E-24 | 188 | 237 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MDQASPADPA ASCSASASPS PSASAAASAA ASASGDVAAM LPDSPPRRGA GHRRAQSEIL 60 LGGAALPDDL TFDADLGVVG EACVAGDEDE EDEDEDEEGG GGGAGGSRMF EMFLENGGTL 120 AGPSAHPHPA ATATPPPRPR HQHSMSMDGS TSLLGSAAAG TPGRAGADAK KAISDAKLAE 180 LALVDPKRAK RILANRQSAA RSKERKMRYI AELERKVQNL QSEATTLSAQ LAMLQRDTTG 240 LTSENSDLKV RVQTMEQQVR LQDALNDRLR DEIQQLKVAT GQVNANIGKM GNFSMSSFGG 300 NPQSYQRSHI QSLLAAQQLQ QLQIHSQHQQ QQTHLQQQHQ LLQEAHPFPV DLKMRGFAMS 360 SHAQNAGASD SHAVKSEP* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor with an activatory role. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G133700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066468 | 0.0 | BT066468.1 Zea mays full-length cDNA clone ZM_BFb0003G23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448110.1 | 0.0 | transcription factor RF2a | ||||
Swissprot | Q04088 | 8e-90 | POF21_ARATH; Probable transcription factor PosF21 | ||||
TrEMBL | C5YBG0 | 0.0 | C5YBG0_SORBI; Uncharacterized protein | ||||
STRING | Sb06g021350.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12302 | 29 | 37 | Representative plant | OGRP126 | 17 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06070.1 | 6e-75 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G133700.1.p |
Entrez Gene | 8075875 |
Publications ? help Back to Top | |||
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