PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G089000.1.p
Common NameSb06g017460, SORBIDRAFT_06g017460
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 346aa    MW: 36920.8 Da    PI: 5.1167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G089000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.94.9e-15148194455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+k+Lq
  Sobic.006G089000.1.p 148 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRYVKELQ 194
                           699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.72144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12148194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-18148202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.59E-16149198No hitNo description
SuperFamilySSF474592.09E-17149206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-16150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.193264340IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEDSGLFMQW AMTTLQHDED LTVAVGVAPI DDGRGGATFP SLQALREASQ AAEMIQELIG  60
EPQPHAANDC CSGDDGGTAG NTSSGTAPRR SSSSSSATTQ PVSWNFGAAP VPPDQAAATV  120
SLLPDMVCRS PPTRRAVLKT VGSIYAQDHI IAERKRREKI NQRFIELSTV IPGLKKMDKA  180
TILSDATRYV KELQEKLKTL EDDGGSGSND RGVMESWVLV KKPCIAAVPE DAAGSSPSWD  240
SSGTSPARNP LPEIEARFLN KNVMVRIHCV DGKGVAVRVL AELEELHLSI VHANVMPFQA  300
CTLIITITAK VDEGFTVTAE EIVGRLKSAA IMHQQSRCNS TEETA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152157ERKRRE
2153158RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G089000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659952e-47AK365995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446521.10.0transcription factor bHLH18
TrEMBLC5Y8U60.0C5Y8U6_SORBI; Uncharacterized protein
STRINGSb06g017460.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Representative plantOGRP1191336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-37bHLH family protein