PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G074600.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family E2F/DP
Protein Properties Length: 458aa    MW: 49961.4 Da    PI: 5.813
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G074600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP75.36.2e-24152217171
               E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                           r+++sL llt+kf++ll+++e+gi++ln+ ak+L    v  k+RRiYDi+NVLe+ +liekk kn+i wkg
  Sobic.006G074600.1.p 152 RYDSSLALLTKKFINLLKEAEDGILDLNSTAKTL---GV--KKRRIYDITNVLEGSGLIEKKLKNRICWKG 217
                           6899******************************...**..9***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.1E-26149219IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.45E-16152215IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.2E-31152217IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.3E-22154217IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146608.56E-37227334No hitNo description
SuperFamilySSF1440741.31E-27228334No hitNo description
PfamPF164215.9E-28232332IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MSEGARPAAA ARQIVKSLQR CGRLSLERPP FGAALGDYHQ FPRPSPSPAA AAAAAATPGG  60
REEFDEGIVI RTPIKRKAPY GECDTAESTG LSMASSGFIQ GVGSPRMTPI SGNTARKYKS  120
SKSEYTKAGP QTPTLNAAGS PGNPPTPAGT CRYDSSLALL TKKFINLLKE AEDGILDLNS  180
TAKTLGVKKR RIYDITNVLE GSGLIEKKLK NRICWKGLDK LGPNLDDDLS VLKTDFGNLN  240
LQEQALDEHI SKIQEKLKDL TEDESNKGWL FHTEDDIMGV RCFQNQTLIA IKAPQGSSLE  300
VPNPDVMIGD SLQRRYRLVI RSTMGPIDLY LVSKTEEKME GKLGDAAEPA GHTDVAKHGS  360
IERPSAKRAW ERSRKEEVAL KAQKTQKTPD LNPPCHSEGV LRRINPSDVD SGADYLLLTD  420
YDVSITDMWR TEEMQLDEID PNDFLAEVVS SPETLEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A7e-22147218174PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G074600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9490550.0EU949055.1 Zea mays clone 394824 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319034.10.0transcription factor E2FA isoform X1
TrEMBLA0A1Z5RDH00.0A0A1Z5RDH0_SORBI; Uncharacterized protein
STRINGSb06g016190.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Representative plantOGRP12251749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-103E2F transcription factor 3