PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.005G200800.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

HB-other

Protein Properties

Length: 1025aa MW: 113177 Da PI: 7.3279

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.005G200800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.4	7.4e-06	795	855	1	54
TT--SS--HHHHHHHHHHHHHSSS--HHH..HHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaee..reeLAkkl.....gLterqVkvWFqNrRak 54 rrkRt +++eq++eLe++ ++ + +++ + ++kl ++t +q k+W Nr+ak Sobic.005G200800.1.p 795 RRKRTLMNNEQIDELEKALVDEPEMHKNAvlLQSWSEKLslqgsEITASQLKNWLNNRKAK 855 89***************9988777766226889999999999**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-5	774	856	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.11E-5	791	861	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.544	792	859	IPR001356	Homeobox domain
SMART	SM00389	6.2E-5	794	863	IPR001356	Homeobox domain
CDD	cd00086	1.65E-5	795	858	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0060195	Biological Process	negative regulation of antisense RNA transcription
GO:0005730	Cellular Component	nucleolus
GO:0003697	Molecular Function	single-stranded DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1025 aa Download sequence Send to blast
MRKIPRKNKR KLSPTSCPCS PPLPVPPHAG SAASARPKRR RSEGRRRPPH PLPTPLSLAV 60 VPILYRRRRR RPPPRRGWAD VDGDPRTSGS AAPLKMIDMV SAVEELSGLT SKELGEMLKE 120 SDNFVLQSKT EDGVPKQVDM EKLVSSLPLH LLAVCLELGQ GLDLTYVLRG MRFLHSLSDL 180 ASRHTRLEQV LLDDVKLSEQ VMDLIFFLLS ILAEQKKENN DGASPLVHAS LVAASLHLLT 240 SYFSSQWHEL VHILLAHPKV DIFMDVAFDS LHEDVRLLNI RLSSMGSGSF HVGSLESRRA 300 HFICQQCEAS LQFLLLLCQQ KLFRDRILKN KELSRNGGIL SLSHTILKLV VPECLKQSTD 360 LVASISRLKA KILSILLQLC EAESVSYLDE VATNPNSRRL GQTLALEVLN LLKIAFGRKQ 420 NNTSDSHDKG KFYPMGSVLI SALRLVDVFS DDSNFRSSFM TNTVPFLTQI LATAHEEFVS 480 SWCSANVPAI EEDASLDYDP FGASEVALLA SDNVLTEAKA NYSCPFRPSL PSMQYAQTRT 540 SCVVKIIANL HIFVPNICEE QERDLFLQSF QKYLVSGSPK LSSDQPASSD FKATKVCTNL 600 GSLSDYAKTL VPNFLNVEDV VLLSDFSDKL QSWCKSEVGQ VAVKVGQNDT PPESTEDMHP 660 VQQPLLTRTS PPDSKMNNLP KDVQNMEVST PIPPINPQGN GKDETPKNTV SRNGGFLQNA 720 VGQDLVHLGV ARTASGGSSA VASGVSTGHQ RSKMDLDPAS SSVDNFKTPE LTKENGLQED 780 EKGESSMYDE RQPKRRKRTL MNNEQIDELE KALVDEPEMH KNAVLLQSWS EKLSLQGSEI 840 TASQLKNWLN NRKAKLARIA KERGPFEGEN ADKPSTPSTI HLGESSESAG EDNYLPPARV 900 MNALSKGRLV SPDSNEQMSQ AELSPNTMLI RPFTRSFSLE PGRLVSLVDS DGKEVGRGKI 960 FQTPGKSPAE SRVCMVDVTE LRTEKWRELP HPSEASGRTF QEAEARNGGI MRVSWDVVRL 1020 SPAV*

Sequence ? help Back to Top

Protein Sequence Length: 1025 aa Download sequence Send to blast

MRKIPRKNKR KLSPTSCPCS PPLPVPPHAG SAASARPKRR RSEGRRRPPH PLPTPLSLAV  60
VPILYRRRRR RPPPRRGWAD VDGDPRTSGS AAPLKMIDMV SAVEELSGLT SKELGEMLKE  120
SDNFVLQSKT EDGVPKQVDM EKLVSSLPLH LLAVCLELGQ GLDLTYVLRG MRFLHSLSDL  180
ASRHTRLEQV LLDDVKLSEQ VMDLIFFLLS ILAEQKKENN DGASPLVHAS LVAASLHLLT  240
SYFSSQWHEL VHILLAHPKV DIFMDVAFDS LHEDVRLLNI RLSSMGSGSF HVGSLESRRA  300
HFICQQCEAS LQFLLLLCQQ KLFRDRILKN KELSRNGGIL SLSHTILKLV VPECLKQSTD  360
LVASISRLKA KILSILLQLC EAESVSYLDE VATNPNSRRL GQTLALEVLN LLKIAFGRKQ  420
NNTSDSHDKG KFYPMGSVLI SALRLVDVFS DDSNFRSSFM TNTVPFLTQI LATAHEEFVS  480
SWCSANVPAI EEDASLDYDP FGASEVALLA SDNVLTEAKA NYSCPFRPSL PSMQYAQTRT  540
SCVVKIIANL HIFVPNICEE QERDLFLQSF QKYLVSGSPK LSSDQPASSD FKATKVCTNL  600
GSLSDYAKTL VPNFLNVEDV VLLSDFSDKL QSWCKSEVGQ VAVKVGQNDT PPESTEDMHP  660
VQQPLLTRTS PPDSKMNNLP KDVQNMEVST PIPPINPQGN GKDETPKNTV SRNGGFLQNA  720
VGQDLVHLGV ARTASGGSSA VASGVSTGHQ RSKMDLDPAS SSVDNFKTPE LTKENGLQED  780
EKGESSMYDE RQPKRRKRTL MNNEQIDELE KALVDEPEMH KNAVLLQSWS EKLSLQGSEI  840
TASQLKNWLN NRKAKLARIA KERGPFEGEN ADKPSTPSTI HLGESSESAG EDNYLPPARV  900
MNALSKGRLV SPDSNEQMSQ AELSPNTMLI RPFTRSFSLE PGRLVSLVDS DGKEVGRGKI  960
FQTPGKSPAE SRVCMVDVTE LRTEKWRELP HPSEASGRTF QEAEARNGGI MRVSWDVVRL  1020
SPAV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	70	RRRRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.005G200800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU946678	0.0	EU946678.1 Zea mays clone 322151 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021317157.1	0.0	nodulin homeobox isoform X1
TrEMBL	A0A1B6PTM8	0.0	A0A1B6PTM8_SORBI; Uncharacterized protein
STRING	Sb05g025680.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5126	14	18
Representative plant	OGRP3853	5	7

Link Out ? help Back to Top
Phytozome	Sobic.005G200800.1.p