PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G038700.1.p | ||||||||
Common Name | Sb05g003240, SORBIDRAFT_05g003240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 489aa MW: 53416.7 Da PI: 6.601 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.1 | 2.9e-11 | 184 | 212 | 5 | 33 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k+ rr+++NReAAr+sR+RKka+i++Le Sobic.005G038700.1.p 184 KVIRRLAQNREAARKSRLRKKAYIQQLES 212 789************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-7 | 180 | 243 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.668 | 182 | 226 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.6E-8 | 182 | 226 | No hit | No description |
CDD | cd14708 | 7.37E-21 | 184 | 236 | No hit | No description |
Pfam | PF00170 | 3.1E-8 | 184 | 219 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.07E-7 | 186 | 225 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 187 | 202 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 8.0E-29 | 264 | 337 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MGETSSSSHS RQDPSLLGYG FHGAIANSTT TPANFFDQEG ATYFGELEEA FMHQVASLRR 60 TQQQAATVSA PHHGDTKPFP TAATTTATAA TATTAARPPP TLDIFPAWPM RSLHTPKECS 120 NVTADSTDDS ESSSKNNSNH SSDQLGAAAN MATQFDQASQ QQQLQHKNMA TSSTPRTGKP 180 LDPKVIRRLA QNREAARKSR LRKKAYIQQL ESCKLKLSQM EQDMQRARSQ GLFLGGGTGA 240 NTSSGAAMFD VEYARWLDDH SRRLAELNGA LHAHLADGDL RAIVDDALTH HDELFQLKAM 300 AAKSDVFHLI TGVWTTPAER CFLWMGGFRP SDLLKTLLPQ LDPLTEQQVI GICNLQQSSQ 360 QAEEALSQGL EQLHQSLADT MAGGSLIDDA NMSFMSQMAL ALGKLANLEG FVIQADNLRQ 420 QTLHQMHRIL TVRQAARCFL AIGEYHNRLR ALSSLWASRP REILVNDEGN CEEISIAAQP 480 SQSQFSAF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.7164 | 0.0 | callus| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G038700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF111321 | 0.0 | KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450285.1 | 0.0 | transcription factor TGAL4 isoform X1 | ||||
Refseq | XP_021317277.1 | 0.0 | transcription factor TGAL4 isoform X1 | ||||
Swissprot | Q53Q70 | 0.0 | TGAL4_ORYSJ; Transcription factor TGAL4 | ||||
TrEMBL | A0A1Z5RH82 | 0.0 | A0A1Z5RH82_SORBI; Uncharacterized protein | ||||
STRING | Sb05g003240.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4444 | 36 | 70 | Representative plant | OGRP6496 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.3 | 1e-123 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G038700.1.p |
Entrez Gene | 8070637 |
Publications ? help Back to Top | |||
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