PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G004000.1.p
Common NameSb05g000480, SORBIDRAFT_05g000480
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 364aa    MW: 39782.6 Da    PI: 6.9675
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G004000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.31.1e-3084137255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           prlrWtpeLH +F++av++LGG+++AtPk +l+lm+vkgL++ hvkSHLQ+YR+
  Sobic.005G004000.1.p  84 PRLRWTPELHLCFLRAVDRLGGQDRATPKLVLQLMDVKGLSIGHVKSHLQMYRS 137
                           9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.75280140IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2980138IPR009057Homeodomain-like
SuperFamilySSF466893.4E-1581138IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-2383139IPR006447Myb domain, plants
PfamPF002493.8E-885136IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAGGSKGCDE SSADHQLLLS SGQAGDDGED DAGGADDVPP AGRHDGSSSN SSTVELDEAG  60
GDSGRKVAGA SPSSVRPYVR SKNPRLRWTP ELHLCFLRAV DRLGGQDRAT PKLVLQLMDV  120
KGLSIGHVKS HLQMYRSKKI DDSDQGATGS WRDLHHQLQD GGQAYNLGHL SFHHGQTGAS  180
TILSARFGAW PHWSNFHDPS YLLHSHHLLG SKHYYSSTAE ADVFLRNRAQ YTARATSNTP  240
ASTTLQRCLN DQFMNHHQRR LSQNEDNIHH DPLDLELALD IGPSQDKRIK RSSGCSWRRH  300
QEEENVGNQE VESATDDTRL SLSLFPSPPY VRTSSGGHHK VLGLNMEKGT AHPTRTSTLD  360
LTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-1785139357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1785139357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1785139357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1785139357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G004000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0684401e-109BT068440.1 Zea mays full-length cDNA clone ZM_BFb0191O11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321607.10.0uncharacterized protein LOC8064764
TrEMBLC5Y2Z40.0C5Y2Z4_SORBI; Uncharacterized protein
STRINGSb05g000480.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44083671
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.14e-38G2-like family protein