PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G254500.1.p
Common NameSb04g029350, SORBIDRAFT_04g029350
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YB
Protein Properties Length: 277aa    MW: 29163.2 Da    PI: 6.882
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G254500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB171.49.9e-5435130297
                 NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                           reqdr++Pianv+rim++vlPa+akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa++ lGf+dyvepl+vyl++y
  Sobic.004G254500.1.p  35 REQDRLMPIANVIRIMRRVLPAHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSRLGFDDYVEPLSVYLHRY 123
                           89*************************************************************************************** PP

                 NF-YB  91 relegek 97 
                           r++ege 
  Sobic.004G254500.1.p 124 RDFEGEA 130
                           ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.7E-4828132IPR009072Histone-fold
SuperFamilySSF471133.73E-3737134IPR009072Histone-fold
PfamPF008084.5E-2541104IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.0E-176886No hitNo description
PROSITE patternPS0068507187IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.0E-1787105No hitNo description
PRINTSPR006159.0E-17106124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDSSFLPAGA ESGSVVSGGA NNGAAAQQQA PPLIREQDRL MPIANVIRIM RRVLPAHAKI  60
SDDAKETIQE CVSEYISFIT GEANERCQRE QRKTITAEDV LWAMSRLGFD DYVEPLSVYL  120
HRYRDFEGEA RGVGLAPGAA PSRGGDHHHH HPLKSRGPGG GSGAAMLPHH HHHHDMQMHA  180
AMYGGTVPPA PGPPHHGHGH GFLMPHPQGG SHYLPYPYEP TYGGEHAMAA YYGGAAAYAP  240
GNGGGSGDGS GSSGGSASHT PQGSGGFEHP HPFAYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A3e-6134125697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G254500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9765170.0EU976517.1 Zea mays clone 896651 nuclear transcription factor Y subunit B-6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452627.20.0nuclear transcription factor Y subunit B-2
TrEMBLA0A194YRJ00.0A0A194YRJ0_SORBI; Uncharacterized protein
STRINGSb04g029350.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.26e-64nuclear factor Y, subunit B6