PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G214300.1.p
Common NameSb04g025960, SORBIDRAFT_04g025960
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 691aa    MW: 72575 Da    PI: 6.4361
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G214300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.31.2e-10285341155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Sobic.004G214300.1.p 285 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 341
                           57*******************5444.2455535555.7799999*************98 PP
2AP249.78.8e-16384435155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Sobic.004G214300.1.p 384 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 435
                           89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.27E-14285351IPR016177DNA-binding domain
PfamPF008473.7E-8285341IPR001471AP2/ERF domain
CDDcd000183.93E-17285351No hitNo description
PROSITE profilePS5103217.108286349IPR001471AP2/ERF domain
SMARTSM003805.8E-22286355IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-11286350IPR001471AP2/ERF domain
PRINTSPR003673.6E-6287298IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-18384445IPR016177DNA-binding domain
CDDcd000181.40E-23384445No hitNo description
PfamPF008473.1E-10384435IPR001471AP2/ERF domain
SMARTSM003808.1E-34385449IPR001471AP2/ERF domain
PROSITE profilePS5103219.467385443IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-18385444IPR001471AP2/ERF domain
PRINTSPR003673.6E-6425445IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MASTNNHWLG FSLSGQDNPQ PNHQDSSPAA AGIDISGASD FYGLPTQQGS DGNLGVPGLR  60
DDHASYGIME AFNRVPQETQ DWNMRGLDYN GGGSELSMLV GSSGGGGGGG KRAVEDSEPK  120
LEDFLGGNSF VSEHDQSGGY LFSGVPMASS TNSNSGSNTM ELSMIKTWLR NNQVPQPQPP  180
AAPHQAPQTE EMSTDANASA SSFGCSDSMG RNGTVAAAGS SQSLALSMST GSHLPMVVAG  240
GGASGAASES TSSENKRASG AMDSPGSAVE AVPRKSIDTF GQRTSIYRGV TRHRWTGRYE  300
AHLWDNSCRR EGQSRKGRQG GYDKEDKAAR AYDLAALKYW GTTTTTNFPI SNYEKELEEM  360
KHMTRQEYIA YLRRNSSGFS RGASKYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTEE  420
EAAEAYDIAA IKFRGLNAVT NFDMSRYDVK SILESSTLPV GGAARRLKDA VDHVEAGATI  480
WRADMDGGVI SQLAEAGMGG YASYGHHAWP TIAFQQPSPL SVHYPYGQPP SRGWCKPEQD  540
AAVAAAAHSL QDLQQLHLGS AAHNFFQASS SSAVYNSGGG GASGGYHQGL GGGSSSFLMP  600
SSTVVAGADQ GHSSSTANQG STCSYGDDHQ EGKLIGYDAM VAATAAGGDP YAAARSGYQF  660
SSQGSGSTVS IARANGYSNN WSSPFNGGMG *
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G214300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557320.0EU955732.1 Zea mays clone 1543867 protein BABY BOOM 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452443.10.0AP2-like ethylene-responsive transcription factor PLT1
SwissprotQ8LSN21e-128BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A194YR450.0A0A194YR45_SORBI; Uncharacterized protein
STRINGSb04g025960.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-119AP2 family protein