PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

CO-like

Protein Properties

Length: 337aa MW: 35353.2 Da PI: 4.7975

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.004G211200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.9	4.1e-08	24	61	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 r C+ + ++++l+C++++ +lC+ C H g H Sobic.004G211200.1.p 24 RPCDACAAEPARLHCREDGAFLCPGCDARAH-GagsrHA 61 68**************************999.4466675 PP
2	zf-B_box	22.9	1.8e-07	63	107	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +e+ ++ C+ + lC+ C +H+ H++ p Sobic.004G211200.1.p 63 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 107 679*****************************6688888898877 PP
3	CCT	70.2	5e-24	258	300	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k+ Sobic.004G211200.1.p 258 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKR 300 9****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	4.2E-5	21	65	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.84	21	65	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.0E-6	24	61	IPR000315	B-box-type zinc finger
CDD	cd00021	1.20E-6	24	65	No hit	No description
PROSITE profile	PS50119	10.424	61	108	IPR000315	B-box-type zinc finger
Pfam	PF00643	8.0E-6	63	108	IPR000315	B-box-type zinc finger
SMART	SM00336	4.6E-9	66	108	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	16.916	258	300	IPR010402	CCT domain
Pfam	PF06203	3.0E-18	258	300	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009416	Biological Process	response to light stimulus
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MDTAVELELE QKPAVGYWSV VGARPCDACA AEPARLHCRE DGAFLCPGCD ARAHGAGSRH 60 ARVWLCEVCE HAPAAVTCRA DAAALCAACD ADIHSANPLA RRHERLPVAP FFGALADAPQ 120 PFPSPAFAAA AAAGGQAQGE AAAADNDDDD GSNEAEAASW LLAEPDNSHE DSAAATAADT 180 LFAESDAYLG VDLDFARCMD GVKAIGVPVA PPELDIAAGS FFYPEHSMNH SLSSSEVAVV 240 PDAQAAGVPA VVSRGKEREA RLMRYREKRK NRRFDKTIRY ASRKAYAETR PRIKGRFAKR 300 CSAEADDDAL EHDEGACFSP AGSAHAASDG VVPSFC*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.10225	0.0	ovary\| panicle

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.004G211200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956239	0.0	EU956239.1 Zea mays clone 1559496 CONSTANS-like protein CO5 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002452430.1	0.0	zinc finger protein CONSTANS-LIKE 3
TrEMBL	C5XXA8	0.0	C5XXA8_SORBI; Uncharacterized protein
STRING	Sb04g025660.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2191	32	72
Representative plant	OGRP691	17	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24790.1	6e-39	CONSTANS-like 3

Link Out ? help Back to Top
Phytozome	Sobic.004G211200.1.p
Entrez Gene	8059668