PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G171600.1.p
Common NameSb04g022270, SORBIDRAFT_04g022270
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 323aa    MW: 33930.1 Da    PI: 6.2603
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G171600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.2e-081241621355
                           HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           R+r+++ f eLr+l+P+ +     +K +K++   +A++YI+ L+
  Sobic.004G171600.1.p 124 RKRMKDLFRELRDLMPHvP-----RKTDKVALMGEAIKYIRALE 162
                           99***************77.....9****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.179111161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-11115172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-8117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-11118171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-6120162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.96E-8124164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAQNGPHGHQ VDAAASDDGH RAPPTTVAFS LTSAGPYGNA GSSAGNMENL DASASKGKNL  60
IPDLNMEERD DSAGGSKDKP RSEAELVVPA ADADADAGAD KGKSVAAADD GEPTVNIALE  120
PEKRKRMKDL FRELRDLMPH VPRKTDKVAL MGEAIKYIRA LEEKAAMLGK QVLARPPPAA  180
ARGEASSSSS SSLTAAMMPD VPRGWGGVPA VPPAGPAVPA SPPLRCNTWT WPNVALTVAN  240
ENACISVCVP RRANNTLSML MSVLDNHGID VITSQISSDR ARDMFMIYGH VTGIGGENRR  300
SAEEVYQRAV SEIKCRLNNS NT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G171600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452243.10.0transcription factor bHLH95
TrEMBLA0A1Z5RMY20.0A0A1Z5RMY2_SORBI; Uncharacterized protein
STRINGSb04g022270.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-08bHLH family protein