PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G171500.1.p
Common NameSb04g022260, SORBIDRAFT_04g022260
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 334aa    MW: 35269.5 Da    PI: 6.5238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G171500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11113156754
                           HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           + Er RR+r+++ f  L++l+P+ +     +K +Ka+ + +A+ YIk L
  Sobic.004G171500.1.p 113 ALERERRKRMKDLFRSLQDLMPHvP-----QKTDKATLVGEAITYIKVL 156
                           78*********************77.....9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.005106156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-14108168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-10112162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-14113168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.72E-11113159No hitNo description
PfamPF000109.0E-9113156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.742249328IPR002912ACT domain
CDDcd048732.02E-4250301No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAQNGPHGHQ VDAAPPTTVA VFSLTSAGPN GNGGSSAGNM ENLDASGMGK KNLIPDLNME  60
ERDDSAGGSK DKPRSEAKVE VAAADADADA DADKGKSIAA AGDDDGEPNV NIALERERRK  120
RMKDLFRSLQ DLMPHVPQKT DKATLVGEAI TYIKVLEEKA DMLGKQALAA RQAAARGEAS  180
SSSSLLSLRA MPPTAQGMAA LCSWNAPRGW GGVPVQPAAP AVPASTSPMR CKTWAGPNMV  240
LTVANDNAYI SVWAPRRANT LTMVMSVLDN HGIDVITAQI SSDRVRALFM IYAHVTGIGG  300
ENRRSSEEVY QRAVSEIVYR LHNNNNNNNN NNG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G171500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452242.10.0transcription factor bHLH95
TrEMBLC5XU500.0C5XU50_SORBI; Uncharacterized protein
STRINGSb04g022260.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-15bHLH family protein