PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G150400.1.p
Common NameSb04g020050, SORBIDRAFT_04g020050
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HSF
Protein Properties Length: 486aa    MW: 53270.1 Da    PI: 5.145
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G150400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.74.2e-34271182101
                           HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
          HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                           Fl k+ye+++d++ + ++sws ++  sfvv+++ efa ++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF++++F kg
  Sobic.004G150400.1.p  27 FLLKTYEMVDDPSSDAVVSWSdASDGSFVVWNPPEFAARMLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEYFVKG 106
                           9********************66669****************************************999.........*********** PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  90 kkellekikrkk 101
                           +k+ll++i+r+k
  Sobic.004G150400.1.p 107 QKHLLKNIHRRK 118
                           **********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.1E-5823117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.84E-3423117IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.9E-3623117IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-182750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-3027117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-186678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-187991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MEVAAARGTG SGGGGGGGGG GGGPAPFLLK TYEMVDDPSS DAVVSWSDAS DGSFVVWNPP  60
EFAARMLPTY FKHNNFSSFI RQLNTYGFRK IDPERWEFAN EYFVKGQKHL LKNIHRRKPI  120
HSHSHQPGAL PDNERALFED EIDRLSREKA ALQADLWKFN QQQSGAVSQI EDLERRVLDM  180
EQRQTKMLSF LQQAQKNPQF VSKLIKMAEA SPIFADAFHK KRRLPGFEYI TEATETATSF  240
FDDHSSSSRQ EMGNLLNQHF SDKLKLGLCP AMTESNLITL STQSSHEDNG SPHGKHPDYE  300
RTAMECLPLV PQMMELSDTG TSICPAKSLS FAAAANDDGF LPCHLNLSLA SCSMDVGRSQ  360
IPVANGNIVD EKDGPAEMTT PTMEKVGSIP DRCHDADTQN EASGDAGAAA DATGRPHQGS  420
QAPPEEHAAP QVVANDKFWE QFLTERPGCS EAEEASSTLR RDPDHTQQAD QGTTSDRRDM  480
GQLKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-221811717129Heat shock factor protein 1
5d5v_B5e-221811717129Heat shock factor protein 1
5d5v_D5e-221811717129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.133400.0callus| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G150400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424090.0BT042409.1 Zea mays full-length cDNA clone ZM_BFb0221P10 mRNA, complete cds.
GenBankEU9741540.0EU974154.1 Zea mays clone 441220 heat shock transcription factor like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452118.10.0heat stress transcription factor A-5
SwissprotQ6K6S50.0HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLC5XSG60.0C5XSG6_SORBI; Uncharacterized protein
STRINGSb04g020050.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Representative plantOGRP97161012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-111HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]