PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G066600.1.p
Common NameSb04g005580, SORBIDRAFT_04g005580
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARR-B
Protein Properties Length: 632aa    MW: 68631.8 Da    PI: 6.5687
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G066600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.56.1e-28213266155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl
  Sobic.004G066600.1.p 213 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 266
                           79*******************.********************************8 PP
2Response_reg82.21.7e-27301381109
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 
                           vl vdD+p+ ++ll+++l++ +y +v+++ ++  al+ll+ek+  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge +++ 
  Sobic.004G066600.1.p  30 VLAVDDDPTCLKLLEKLLQHCQY-HVTTTGQAATALKLLREKKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVM 116
                           799********************.***************888888*******************87754.558**************** PP

                           HHHHTTESEEEESS--HHHHHH CS
          Response_reg  88 ealkaGakdflsKpfdpeelvk 109
                           + +  Ga d+l Kp+ +e+l++
  Sobic.004G066600.1.p 117 KGITHGACDYLLKPVRIEQLRT 138
                           ********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.7E-1974631IPR017053Response regulator B-type, plant
SuperFamilySSF521722.56E-3527148IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.7E-4227165No hitNo description
SMARTSM004487.8E-3328140IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.81529144IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.0E-2430139IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.86E-2731143No hitNo description
PROSITE profilePS5129411.34210269IPR017930Myb domain
SuperFamilySSF466895.91E-20210270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-29211271IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-24213266IPR006447Myb domain, plants
PfamPF002492.3E-6215265IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MTVEDVKLQA AKANGGGHGA KDQFPVGMRV LAVDDDPTCL KLLEKLLQHC QYHVTTTGQA  60
ATALKLLREK KDQFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG ETQTVMKGIT  120
HGACDYLLKP VRIEQLRTIW QHVVRRRSCD AKNNGNDNDD SGKKLQVVSA EGDNGGGNRN  180
KRTSRRGRDD NGDDGDDSDE NSNENGDSST QKKPRVVWSV ELHRKFVAAV NQLGIDKAVP  240
KKILDLMNVE NITRENVASH LQKYRLYLKR LSADASRQAN LTAAFGGRNP AYVNMGLDAF  300
RQYNAYGRYR PVPTTNHSQP NNLLARMNSP AFGMHGLLPS QPLQIGHTQN NMSTSVGNVG  360
GMNNGNLIRG AHMPLQDTSK CFPTGPSGNS FANISNSIQL VTTNNLPLQS LEPSNQQHLG  420
RLQSSADPFN SFVGESPQFP DLGRCNTTWP TAVSSSNVQE LGQKDRIVNG PKLEPLSSFT  480
EASSQIPLLG NEMQSQVASL ASNGLPMPFT QEAAPFAYGS STNSREMLNN NLALSNSGIN  540
SSLPNLRIDG SVVPRQTLDG GNSGGVPPLQ DGRIDHQAVS SHLSYNNELM MGTSRLQRGL  600
SGGLDDIVVD MFRPDRADDG VPFIDGDWEL V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-25209272164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.202060.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G066600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0620950.0AB062095.1 Zea mays ZmRR9 mRNA for response regulator 9, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453411.10.0two-component response regulator ORR24
SwissprotQ6H8050.0ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLC5XWW50.0C5XWW5_SORBI; Two-component response regulator
STRINGSb04g005580.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-105response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]