PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G049700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 457aa    MW: 52630.3 Da    PI: 9.0035
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G049700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.8e-073356126
                          --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                          ykt+lC  ++r G C++ d+C+FaHg
  Sobic.004G049700.1.p 33 YKTKLCALWQR-GGCSR-DTCSFAHG 56
                          9**********.*****.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.4E-122762IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-53161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.5823258IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-53356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MRDRSVEREL PSRERGDRPP PGMLGPPRRG PAYKTKLCAL WQRGGCSRDT CSFAHGHAEL  60
RRFPGSRTSF PPRAGRRDYR GGDFRDRFDR RRSPHRRHSP DRDSRGHRSL HDRRPNSQER  120
ESSYSRSPSR KSERRHEKKP DDGETNSSRS LSVSDNNDDR KKETLLSGDD KEDHEIQLKQ  180
IRQDMELLRD DKSHLEIILD QKNAEVRKIS SRVNDLDLQL RKEKEECHRM TSKMKKFIKA  240
HTRFLKAQEE LKRSQARFER LGDLLASDIL KRGANEEVSS INVDEDPNGP YERSPNAATA  300
KKRSILYSTS EEAKAVKKRR ERDSDTTRPD KYRSEATIAE FEKPIKGTEP TKSLYLKKKL  360
WEDEKDKIGN FVSSANTDKV KESPVKHVLP STGMAAHAVD DLFEAVELED RHDPINASIE  420
NDADDETRSP VMPPQPPPVV NSYEQYEADD EEVDVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300319KKRSILYSTSEEAKAVKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.153000.0embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.004G049700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9620390.0EU962039.1 Zea mays clone 239776 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451585.20.0zinc finger CCCH domain-containing protein 13 isoform X1
SwissprotQ6H7U20.0C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBLA0A194YMV60.0A0A194YMV6_SORBI; Uncharacterized protein
STRINGSi017193m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38822943
Representative plantOGRP51641215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.17e-22C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]