PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G332300.1.p
Common NameSb03g037750, SORBIDRAFT_03g037750
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 400aa    MW: 43914.2 Da    PI: 9.3336
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G332300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.82.7e-1360119155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++ +g+++A+++d   + +   k+ ++++lg f+ +e Aa+ ++ a++k++g
  Sobic.003G332300.1.p  60 SIYRGVTRHRGTGKYEAHLWDkNAWsRTknKKgRQVYLGAFDNEEAAARTYDLAALKYWG 119
                           57*******************766673356446*************************98 PP
2AP254.72.4e-17162214156
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           sgy+GV  ++ +grW+A+I   +     +k+ +lg+fg+ eeAa+a++ a+++l+g+
  Sobic.003G332300.1.p 162 SGYRGVAKHHHNGRWEARIGYaC----GKKYLYLGTFGSQEEAARAYDLAALELRGH 214
                           89****************88744....25**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575117No hitNo description
SuperFamilySSF541712.88E-1560128IPR016177DNA-binding domain
CDDcd000182.31E-1760127No hitNo description
PfamPF008475.5E-1060119IPR001471AP2/ERF domain
PROSITE profilePS5103219.50661127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-1661128IPR001471AP2/ERF domain
SMARTSM003806.4E-2261133IPR001471AP2/ERF domain
CDDcd000183.89E-21162223No hitNo description
SuperFamilySSF541713.6E-17162223IPR016177DNA-binding domain
PfamPF008473.7E-13162214IPR001471AP2/ERF domain
PROSITE profilePS5103217.846163221IPR001471AP2/ERF domain
SMARTSM003805.9E-25163227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17164222IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MTKPHSPSSW AASSLSCVSS SSASCDVPPP WSPKRSSKKQ RSSRRRAKNG AAVTPRRTSS  60
IYRGVTRHRG TGKYEAHLWD KNAWSRTKNK KGRQVYLGAF DNEEAAARTY DLAALKYWGS  120
DSTLNFPLES YRHEHDKMQR MTREAYLATL RRKSSCFSRG ASGYRGVAKH HHNGRWEARI  180
GYACGKKYLY LGTFGSQEEA ARAYDLAALE LRGHAAVTNF DTSNYTHKDD QRRPEPAVQR  240
KPALKPKDEP VDEAPPLPKA HHPVPTPPLL TPKAEPGYEL GEPLALPPGP VLRDADDVDH  300
AIAEILPALC MDPADFEARY PARRARALGG CPPDDQLLRG LALPDSVRFE DDIETLFDAP  360
GGGTGEVQVQ LHAVVTDVSG VDADAAATIS SLASARWWP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G332300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9493531e-149EU949353.1 Zea mays clone 402937 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313485.10.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1B6Q6N90.0A0A1B6Q6N9_SORBI; Uncharacterized protein
STRINGSb03g037750.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-79AP2 family protein