PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G236701.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 426aa    MW: 45771 Da    PI: 8.4274
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G236701.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.55.9e-15350375126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +ktelC+ + +tG C+yGd+C+FaHg
  Sobic.003G236701.2.p 350 FKTELCNKWEQTGACSYGDQCQFAHG 375
                           79***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.3E-18344382IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-10346381IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9349376IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.394349377IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-12350375IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-11383413IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-8384413IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4387414IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338387415IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MLPSYIGTTP RVPSQHPHFS PQSSIVLSNI SPPPILCLLR PRDRGYFEEE ASGLCLPLKK  60
KPRSTMQEAL ISPGNACRFR SALELKPFAF GDQRLASPPG YLNLAAVGGG DDALFRCSSP  120
FSPSLGFSSP SPLATTPSVS LSPSSSASLV DDCDDAAAAD VDAFATGHRL QLARLALQYQ  180
EVADRYELCL ARLADAADEA AALHRENAEL RVANADLTRR LALLSGIGKQ AAAAAIADEV  240
CRLRFGDHNK AAECAPEKPA AVLPKSISVR SNDYLKINKP KQVQAPATPA ANNRKPRASN  300
TTNNPSSVRV YKGNGGDKKG EEPKEPPHTA AAAAAGGIGM ELEVYNQGMF KTELCNKWEQ  360
TGACSYGDQC QFAHGVAELR PVIRHPRYKT QVCRMVLAGE VCPYGHRCHF RHTLTPIERL  420
DLPRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-21350412466Butyrate response factor 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15763LKKKPRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G236701.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0421470.0BT042147.1 Zea mays full-length cDNA clone ZM_BFb0146F09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311485.10.0zinc finger CCCH domain-containing protein 9 isoform X2
SwissprotA2ZVY51e-113C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A1W0VYN30.0A0A1W0VYN3_SORBI; Uncharacterized protein
STRINGSb03g029410.11e-157(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-47C3H family protein