PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.003G220700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 476aa MW: 51863.8 Da PI: 8.047 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.6 | 7.8e-12 | 109 | 134 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f++ tGtCkyGd+CkF H++ Sobic.003G220700.1.p 109 GQKDCAFYMSTGTCKYGDTCKFDHPQ 134 7889********************97 PP | |||||||
2 | zf-CCCH | 18.8 | 2.9e-06 | 158 | 183 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+ ++ +G Ck+ ++CkF+H++ Sobic.003G220700.1.p 158 PGEPDCP-YLLSGRCKFKSKCKFNHPK 183 57899**.9999*************96 PP | |||||||
3 | zf-CCCH | 34.1 | 4.8e-11 | 211 | 235 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f+a+tG Ck+G+ CkF H++ Sobic.003G220700.1.p 211 EPVCSFYAKTGKCKFGAICKFDHPK 235 789********************96 PP | |||||||
4 | zf-CCCH | 40.2 | 5.6e-13 | 290 | 315 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG+ C+F+H+ Sobic.003G220700.1.p 290 PGEVDCSFYMKTGSCKYGSVCRFNHP 315 57899********************9 PP | |||||||
5 | zf-CCCH | 34.1 | 4.5e-11 | 373 | 395 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 C+f+++tG Cky +CkF+H+ Sobic.003G220700.1.p 373 IVCDFYMKTGSCKYSQKCKFHHP 395 57********************8 PP | |||||||
6 | zf-CCCH | 33.5 | 6.9e-11 | 424 | 447 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C f++r+GtC++G CkF H+p Sobic.003G220700.1.p 424 EACAFYMRSGTCRFGVHCKFDHPP 447 78********************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.009 | 107 | 135 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-6 | 107 | 134 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 108 | 134 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-10 | 109 | 134 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 113 | 133 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0081 | 157 | 183 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.554 | 157 | 184 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.55 | 170 | 182 | No hit | No description |
SMART | SM00356 | 2.0E-5 | 208 | 235 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-5 | 208 | 236 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 208 | 236 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-8 | 211 | 235 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-4 | 213 | 233 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.929 | 289 | 317 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.2E-7 | 289 | 316 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-9 | 291 | 315 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 293 | 316 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 295 | 314 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.873 | 369 | 397 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-5 | 369 | 396 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 371 | 398 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.7E-9 | 373 | 395 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 374 | 395 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.042 | 420 | 448 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.2E-5 | 420 | 447 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-5 | 423 | 448 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-8 | 424 | 447 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.4E-4 | 424 | 445 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 476 aa Download sequence Send to blast |
MSDPFNPYYR GAFAGGYSAP PPPPRYSDFE VDLIASRYTG TPSPYPSSAD VGAFDSYVGA 60 RRSAEVLYHQ SFMGSHSTVG QIEALYSSNT MAKRPRLESS LPIYPQRPGQ KDCAFYMSTG 120 TCKYGDTCKF DHPQWVPEGG VPNWKEVPNV EDSYPERPGE PDCPYLLSGR CKFKSKCKFN 180 HPKKMVNALA TGTDNESLIA DSAILPVRPS EPVCSFYAKT GKCKFGAICK FDHPKPKDIK 240 TPPLIAKETI YTATTDAAAN IGAADDSVPA KTRAPTAPAS HNAKGLPIRP GEVDCSFYMK 300 TGSCKYGSVC RFNHPDRPAV DIAFVAPLLP CPASTVPGVV LNPAANFLQS FDFHASHVPV 360 EPAPIYPQRP GEIVCDFYMK TGSCKYSQKC KFHHPIDRSA PHFNENGDPQ PPVTLGFPRR 420 EDAEACAFYM RSGTCRFGVH CKFDHPPRQK AISKLQAAGK EGIEGLSVAL HDPDV* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sbi.5891 | 0.0 | leaf| pollen |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.003G220700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT065656 | 0.0 | BT065656.1 Zea mays full-length cDNA clone ZM_BFc0005B18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021312416.1 | 0.0 | zinc finger CCCH domain-containing protein 8-like isoform X1 | ||||
Swissprot | Q5ZDJ6 | 0.0 | C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8 | ||||
TrEMBL | A0A1B6Q4P3 | 0.0 | A0A1B6Q4P3_SORBI; Uncharacterized protein | ||||
STRING | Sb03g027910.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5816 | 37 | 57 | Representative plant | OGRP6754 | 15 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-126 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.003G220700.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|