PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G150400.1.p
Common NameSb03g013050, SORBIDRAFT_03g013050
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 530aa    MW: 57103.9 Da    PI: 6.6659
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G150400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.17.4e-2198207186
              trihelix   1 rWtkqevlaLiearremeerlrrgk.......................lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                           +Wt+ +v++Li ++ +++++ +  +                       +kk++W++vs +m+++gf +sp+qC++k+++lnkryk++ +
  Sobic.003G150400.1.p  98 KWTDAMVRLLIGVVYSVGDDGEGVAtaggagagragraghghaaaaqqQKKGKWKSVSHAMMDKGFVVSPQQCEDKFNDLNKRYKRVVD 186
                           799999999999999655555532223344455555566666666666***************************************** PP

              trihelix  67 gekkr.tsessstcpyfdqle 86 
                             +++ +++++++++++d l+
  Sobic.003G150400.1.p 187 LLGRGrACRVVENHALLDTLD 207
                           **99967*********99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-1796233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MLGLDMHRAP QQMHPAAAFQ HQQGGFQLQQ QAAPPPPSSF SPYSNTSSSR VVVSAAAVGA  60
GHDDDVVGNG GGGKGGVVVP QQQAQQMASA ACPWTRMKWT DAMVRLLIGV VYSVGDDGEG  120
VATAGGAGAG RAGRAGHGHA AAAQQQKKGK WKSVSHAMMD KGFVVSPQQC EDKFNDLNKR  180
YKRVVDLLGR GRACRVVENH ALLDTLDDMT PKAKDEARKL LSSKHLFFRE MCAYHNSAAA  240
AGGSHLPAHA GGGDAACLHH PAPVPVAAAA SSAARHAYAQ HQAAPSPPGM KDSSADVADD  300
DDDDDDDDDS DDDDAVSDNS DEDVDDYDLE EEDGHMYPSN NRPSHRQHSG GKRGRGEDLD  360
DEAEGGGTGG RSARRRRRRK KAARVAPDPS AMLRQVKSEL ASATAAMDPH QVRSWMRRRA  420
LDVEEQQIRL DSHACYLDGQ RLKWERFRDE KEHELQRARL QNDRHRMESR RLLLMLRHKD  480
IELDMAEVNS SSVDHNPGAG ASPLAAHQQQ QQQQPIGSSP SPSTAGHPN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370378RSARRRRRR
2374380RRRRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G150400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2890283e-87AK289028.1 Oryza sativa Japonica Group cDNA, clone: J090090M16, full insert sequence.
GenBankAP0034143e-87AP003414.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1153F04.
GenBankAP0039213e-87AP003921.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028G04.
GenBankAP0149573e-87AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455555.20.0uncharacterized protein LOC8060364
TrEMBLA0A1B6Q3A70.0A0A1B6Q3A7_SORBI; Uncharacterized protein
STRINGSb03g013050.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Representative plantOGRP1284445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-48sequence-specific DNA binding transcription factors