PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G135101.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ZF-HD
Protein Properties Length: 266aa    MW: 29293.7 Da    PI: 12.197
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G135101.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer56.66.2e-1818552157
           ZF-HD_dimer 21 avDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57
                          a DGCgEfmps +++ +++++l+Ca C CHRnFHRr  
  Sobic.003G135101.1.p 18 AQDGCGEFMPSLEADpADPSSLRCATCRCHRNFHRRLA 55
                          89*********99999*******************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152312.077354IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.0E-151753IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-101853IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.5E-141854IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.37E-11138196IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-22139197IPR009057Homeodomain-like
TIGRFAMsTIGR015656.2E-17142194IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGEADPPLPP PGLRATPAQD GCGEFMPSLE ADPADPSSLR CATCRCHRNF HRRLAELPRC  60
AVRRRRTTAC RPPSTRRPRR SRTRARISTR TARCRRYRAR RARASKPPAV APRPPPPPAS  120
ASLGPMPPAP PETVVPGAAA ARKRFRTKFS PEQKQRMQAL SERLGWRLQK RGEALVDECC  180
QEMGVFKVWM HNNKHNFVGG HNACRSASAS AAAAAAIHHH PSNHGPGWEL GLLRVRVRRR  240
RLRLLPLPRG AATDGYGGEQ AGRRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A1e-161411961675ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235242RVRRRRLR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G135101.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9640707e-59EU964070.1 Zea mays clone 275696 ZF-HD homeobox protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460356.12e-56zinc-finger homeodomain protein 10
SwissprotQ6ER218e-42ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLA0A1W0VX740.0A0A1W0VX74_SORBI; Uncharacterized protein
STRINGSb03g011495.19e-96(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.11e-17homeobox protein 21