PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G028300.1.p
Common NameSb03g002660, SORBIDRAFT_03g002660
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 845aa    MW: 91848.2 Da    PI: 6.137
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G028300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45.2e-181674357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          k  ++t+eq+e+Le+l++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Sobic.003G028300.1.p 16 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRDCpvlaSVDPKQIKVWFQNRRCREKQ 74
                          6789*****************************************************97 PP
2START171.65e-541643712204
                           HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS
                 START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 
                           +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++e+++v+  g  
  Sobic.003G028300.1.p 164 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEVLKDRLLWLRDCRSMEVVNVLPAGnn 251
                           789*******************************************************.9999999999******************9* PP

                           EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
                 START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                           g+++l + +l+a+++l+p Rdf+ +Ry+  l +g++v++++S++ +q  p+    ++++R+e+lpSg+li+p+++g+s +++v+h+dl+
  Sobic.003G028300.1.p 252 GTIELLYLQLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSTKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHIDLE 340
                           **************************************************999999********************************* PP

                           SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                 START 174 grlphwllrslvksglaegaktwvatlqrqc 204
                            +++++++r+l++s+++ ++k+ +a+l++++
  Sobic.003G028300.1.p 341 PWSVPEVVRPLYESSAMVAQKMSMAALRYLR 371
                           ***************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1921175IPR001356Homeobox domain
SMARTSM003891.0E-141379IPR001356Homeobox domain
CDDcd000861.07E-141676No hitNo description
PfamPF000461.3E-151674IPR001356Homeobox domain
SuperFamilySSF466892.48E-161777IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-171874IPR009057Homeodomain-like
CDDcd146864.13E-668107No hitNo description
PROSITE profilePS5084825.241154373IPR002913START domain
CDDcd088751.56E-71158372No hitNo description
Gene3DG3DSA:3.30.530.204.1E-22161368IPR023393START-like domain
SMARTSM002343.5E-46163373IPR002913START domain
SuperFamilySSF559612.61E-36163374No hitNo description
PfamPF018521.0E-51164371IPR002913START domain
PfamPF086702.3E-49700843IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MVTAKEAAAA AMDASKYVRY TPEQVEALER LYYECPKPSS LRRQQLVRDC PVLASVDPKQ  60
IKVWFQNRRC REKQRKESSR LQALNRKLTA MNKLLMEEND RLQKQVSQLV YENGYYRQQT  120
QQSAGLATTD TSCESVVTSG HQNVAAAAPQ AQPRDAGPAG LMSIAEETLT EFLSKATGTA  180
VEWVQMPGMK PGPDSIGIIA ISHGCAGVAA RACGLVGMEP AKVAEVLKDR LLWLRDCRSM  240
EVVNVLPAGN NGTIELLYLQ LYAPTTLAPA RDFWLLRYTS ILDDGSLVVC ERSLSTKQGG  300
PSMPLVQPFI RGEMLPSGFL IRPSDGGGSV IHIVDHIDLE PWSVPEVVRP LYESSAMVAQ  360
KMSMAALRYL RQVAHEDTHS VITGWGRQPA ALRALSQKLT RGFNEALNGL ADDGWSVVES  420
DGVDDVCISV NSSPSKVINC NATFNNGLPV VSSSVLCAKA SMLLQDVSPP ALLRFMREQR  480
SQWADSNLDA FFASAMKPNF CNLPMSRLGG FSGQVILPLA HTFDPEEFLE VIKLGNASNY  540
QDALLHRDLF LLQMYNGVDE NMVGTCSELI FAPIDASFSD DSPLLPSGFR IIPIDAPLDT  600
SSPKCTLDLA STLEVGTPRS RINGSGPGNA ASAGSKAVMT IVFQFAFESH LQDSVAAMAR  660
QYMRSIIASV QRIALALSSS RLVPHGSSIS HTPASPEATT LARWICQSYR FHFGAELIKS  720
GDGSGCEGVL KTLWHHASAI LCCSLKALPV FTFANQSGLD MLETTLVALQ DITLEKVFDD  780
QGRKNLCAEL PGIMEQGFTC IPSGLCVSGL GRPVSYEKAL AWKVLDDDSG AHCICFMFVN  840
WSFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.124580.0ovary| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and leaf blades. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G028300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454995.10.0homeobox-leucine zipper protein HOX29
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLC5XLT30.0C5XLT3_SORBI; Uncharacterized protein
STRINGSb03g002660.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein