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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.002G342800.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
GRAS |
Protein Properties |
Length: 461aa MW: 49275 Da PI: 5.9881 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.002G342800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 364 | 2.1e-111 | 75 | 446 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90
+lLl+cAeav+ ++l++a++lL ++ elasp g++ +R+aayf AL ar+++s + y+ l+ ++ + +s +++ a+++++ +sP+
Sobic.002G342800.1.p 75 LSLLLRCAEAVAMDQLTEARELLPEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLALRQLAAAQSRRVAVAFQAYNALSPL 163
689************************************************************************************** PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
+kfsh+taNqaIl+a++ge+++H+iD+di+qGlQWp L++ LasRp++p slRiTg+g+ s + le+tg+rLa+fA++lg+pfef+
Sobic.002G342800.1.p 164 VKFSHFTANQAILQALDGEDCLHVIDLDIMQGLQWPGLFHILASRPRKPRSLRITGLGA----SLDVLEATGRRLADFAASLGLPFEFH 248
***********************************************************....9************************* PP
GRAS 180 vl......vakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
++ va++ + l ++ + ++ +Ea++V++++ h l+d ++s +++l++sl+Pk++++veq++ h s++Fl rf+ea
Sobic.002G342800.1.p 249 PIegkighVADAAALLGSRQHQNQQrdDEATVVHWMH--HCLYDVTGSDVG----TVRLLRSLRPKLITIVEQDLGH-SGDFLGRFVEA 330
*96665544444444433333333367*********9..889988999998....**********************.899******** PP
GRAS 261 leyysalfdsleak...lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
l+yysalfd+l + + +es er vEr+llg ei+n+va g +r+ + + +e+W + l++aGF+pv+l + a+qa+lll ++++
Sobic.002G342800.1.p 331 LHYYSALFDALGDGagaAEEESAERYAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWGDELRRAGFRPVSLAGSPATQARLLLGMYPW 418
***********544122344559************************998887.9********************************** PP
GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
+gy++ ee+++l lgWkd +L+++SaW+
Sobic.002G342800.1.p 419 KGYTLVEEDACLRLGWKDLSLLTASAWE 446
***************************5 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 461 aa
Download sequence Send
to blast |
MLQGVLSRAP ATDAAAAAAM KAKRSAASPG EEEEGDGRSA RGGKRQQLLA LGPATALASA 60 VAAEEGPETR GLRLLSLLLR CAEAVAMDQL TEARELLPEI AELASPFGSS PERVAAYFGD 120 ALCARVLSSY LGAYSPLALR QLAAAQSRRV AVAFQAYNAL SPLVKFSHFT ANQAILQALD 180 GEDCLHVIDL DIMQGLQWPG LFHILASRPR KPRSLRITGL GASLDVLEAT GRRLADFAAS 240 LGLPFEFHPI EGKIGHVADA AALLGSRQHQ NQQRDDEATV VHWMHHCLYD VTGSDVGTVR 300 LLRSLRPKLI TIVEQDLGHS GDFLGRFVEA LHYYSALFDA LGDGAGAAEE ESAERYAVER 360 QLLGAEIRNI VAVGGPKRTG EVRVERWGDE LRRAGFRPVS LAGSPATQAR LLLGMYPWKG 420 YTLVEEDACL RLGWKDLSLL TASAWEPADD AAASAPTTTS *
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU956238 | 0.0 | EU956238.1 Zea mays clone 1559464 nodulation signaling pathway 2 protein mRNA, complete cds. |
GenBank | KJ726961 | 0.0 | KJ726961.1 Zea mays clone pUT3661 GRAS transcription factor (GRAS54) gene, partial cds. |