PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G330300.1.p | ||||||||
Common Name | Sb02g035680, SORBIDRAFT_02g035680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | GRAS | ||||||||
Protein Properties | Length: 571aa MW: 64509.2 Da PI: 6.2516 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 423 | 2.5e-129 | 200 | 569 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 ++lL++cAea+s++ e+ +l+++ + +s +g+p+qRl ay++e+L ar a+s++++y+al+++e + s e l+++k++++++P+ Sobic.002G330300.1.p 200 KQLLTKCAEALSEERIEEFLTLVQQARGVVSITGEPIQRLGAYLLEGLVARHANSGTNIYRALKCREPE---SNELLSYMKILYNICPY 285 689*****************************************************************9...99*************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177 +kf++++aN aI ea+ +e+++HiiDf+i qG+QW++L+qaLa++p+gpp++RiTg+++p s+ + e l +g+ L+++ ee+++p+e Sobic.002G330300.1.p 286 FKFGYMAANGAIAEALRNEDKIHIIDFQIAQGTQWITLIQALAAKPGGPPHVRITGIDDPVSEyaRGEGLDLVGKMLKSMSEEFRIPLE 374 ************************************************************999999*********************** PP GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 f++l ++++ e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rf+e+l+yysa Sobic.002G330300.1.p 375 FTPLPGIYATQVTKEMLDIRPGEALAVNFTLQLHHTPDESVDVSNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFTETLDYYSA 463 ***97779999****************************************************************************** PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355 +f+s++a+lpre++eri+vE+++l+++ivn++aceg++r+erhe l+kWr+rl++aGF+p+pls+++++ ++ ll+ ++ d y++ee++ Sobic.002G330300.1.p 464 MFESIDANLPRENKERINVEQHCLAKDIVNIIACEGKDRVERHELLGKWRSRLTMAGFRPYPLSSYVNSVIRNLLAYYS-DKYTLEEKD 551 ****************************************************************************999.55******* PP GRAS 356 gslvlgWkdrpLvsvSaW 373 g+++lgWk+r+L+s+SaW Sobic.002G330300.1.p 552 GAMLLGWKNRKLISASAW 569 ****************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.601 | 173 | 551 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.5E-127 | 200 | 569 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MDLHQLLKYR LTGANVFYEF PTENNLANTP WPASPLKSEF SGSPYTPLSS QLECDNLSAL 60 SNTPDNQSST ETISAQPISP LEVDSSYRQA AILRENTQVR PDPLYATSRH NMQHALREIE 120 TVLMAPDAED AATSTKHEFE EHKPAQLMRQ RSRTWSHESR QPSPGVVRTQ FASGYPTASY 180 EFRPEKRLRE LREDPQSMVK QLLTKCAEAL SEERIEEFLT LVQQARGVVS ITGEPIQRLG 240 AYLLEGLVAR HANSGTNIYR ALKCREPESN ELLSYMKILY NICPYFKFGY MAANGAIAEA 300 LRNEDKIHII DFQIAQGTQW ITLIQALAAK PGGPPHVRIT GIDDPVSEYA RGEGLDLVGK 360 MLKSMSEEFR IPLEFTPLPG IYATQVTKEM LDIRPGEALA VNFTLQLHHT PDESVDVSNP 420 RDGLLRMVKG LSPKVTTLVE QESHTNTTPF LMRFTETLDY YSAMFESIDA NLPRENKERI 480 NVEQHCLAKD IVNIIACEGK DRVERHELLG KWRSRLTMAG FRPYPLSSYV NSVIRNLLAY 540 YSDKYTLEEK DGAMLLGWKN RKLISASAWH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-68 | 183 | 569 | 3 | 378 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.19202 | 0.0 | ovary |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G330300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041970 | 0.0 | BT041970.1 Zea mays full-length cDNA clone ZM_BFb0091M24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460825.1 | 0.0 | chitin-inducible gibberellin-responsive protein 1 | ||||
Swissprot | Q69VG1 | 0.0 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | C5XAU2 | 0.0 | C5XAU2_SORBI; Uncharacterized protein | ||||
STRING | Sb02g035680.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10631 | 36 | 43 | Representative plant | OGRP8948 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G330300.1.p |
Entrez Gene | 8084092 |
Publications ? help Back to Top | |||
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