PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.002G297800.1.p

Common Name

Sb02g032860, SORBIDRAFT_02g032860

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

GRF

Protein Properties

Length: 272aa MW: 28314.4 Da PI: 4.7299

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.002G297800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	71.4	1e-22	182	225	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 ++epgrCrRtDGKkWRC+r +++++k+CErH+hrgr+r + ++ Sobic.002G297800.1.p 182 EPEPGRCRRTDGKKWRCWRSTIPNEKYCERHMHRGRKRPVQVVV 225 69************************************887665 PP
2	QLQ	53.2	9e-19	116	151	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aFTa+Qlq+L++Q +y+y+aa++PvP +L+++++k Sobic.002G297800.1.p 116 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPVWK 151 8*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.0E-7	115	151	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.524	116	151	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.2E-11	116	150	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	22.455	182	226	IPR014977	WRC domain
Pfam	PF08879	2.8E-19	183	220	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MAAEGEGKNP AGGGGGDNPQ HQQAVQAAPA PAAQGEAAQE AGGQGTGLEP EGEKADREGE 60 GGGAGEKDDA ACRDLVLVED PEVVAVEDPE EAAATAALQE EMKALVASIP DGAGAAFTAM 120 QLQELEQQSR VYQYMAARVP VPTHLVFPVW KSVTGASSEG AQKYPTLMGL ATLCLDFGKN 180 PEPEPGRCRR TDGKKWRCWR STIPNEKYCE RHMHRGRKRP VQVVVEDDEP DSASGSKSTP 240 GKATDGAKKA DDKSPSSKKL AVAAPAAVQS T*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.13619	0.0	callus\| ovary

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in shoots (Ref.1, PubMed:24854713). Expressed in developing leaves (Ref.1, PubMed:24854713). {ECO:0000269\|PubMed:24854713, ECO:0000269\|Ref.1}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269\|PubMed:24854713}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.002G297800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT042513	0.0	BT042513.1 Zea mays full-length cDNA clone ZM_BFb0310G14 mRNA, complete cds.
GenBank	BT087437	0.0	BT087437.1 Zea mays full-length cDNA clone ZM_BFb0076N13 mRNA, complete cds.
GenBank	EF515849	0.0	EF515849.1 Zea mays putative growth-regulating factor 10 (GRF10) mRNA, complete cds.
GenBank	EU960601	0.0	EU960601.1 Zea mays clone 226522 growth-regulating factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002462840.1	0.0	growth-regulating factor 11
Swissprot	A5HEG9	1e-163	GRF10_MAIZE; GRF-interacting factor 10
TrEMBL	C5X8F1	0.0	C5X8F1_SORBI; Uncharacterized protein
STRING	Sb02g032860.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6735	31	52
Representative plant	OGRP11936	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	7e-30	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Sobic.002G297800.1.p
Entrez Gene	8074212

Publications ? help Back to Top
Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430] Zhang D, et al. GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize. Plant Cell, 2018. 30(2): p. 360-374 [PMID:29437990]