PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G255200.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 353aa    MW: 37120.7 Da    PI: 6.0562
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G255200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.8e-09168215455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  Sobic.002G255200.2.p 168 SHSLAERVRREKISQRMKFLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 215
                           8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-17162233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.85E-10162219No hitNo description
PROSITE profilePS5088815.123164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-17164233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-6168215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-9170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDSDYVASLL MGSSAHALDF AALDTGFLDT LCGGAGLFGV PGVAAGTGCG SGGGGGSPEG  60
SSVSDPAWAR ASDGGNARKR KAPPTGSAGG KETCLGKAAE AKVPDGKRCR VGASDSPVKP  120
KVEEAAASDA SVEVKGQKKG KGKSPKPAVE PPKDYVHVRA RRGQATDSHS LAERVRREKI  180
SQRMKFLQDL VPGCNKVVGK ALMLDEIINY VQSLQQQVEF LSMKLATVNP QLNFSNLSTL  240
LHKDMYQPCG PSANSVFPLE SAGAAFPFCD QGDLFQNFGS GAMEDQCSLS LLDTALPHTA  300
NPQFAFQKQQ RDFWEDGLQN ALPTGSEQRQ EDGLLVPNFD GQLQADQAKI EF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.96420.0callus| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G255200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9727950.0EU972795.1 Zea mays clone 388074 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310511.10.0transcription factor bHLH49-like
SwissprotQ9CAA93e-53BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A1W0W5Y50.0A0A1W0W5Y5_SORBI; Uncharacterized protein
STRINGGRMZM2G144275_P040.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.21e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]