PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G236200.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 450aa    MW: 48464.9 Da    PI: 7.5524
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G236200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.3e-18167216255
                           HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Sobic.002G236200.3.p 167 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 216
                           889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.3E-24162236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.844165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-19165240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.15E-17167220No hitNo description
PfamPF000103.4E-15167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13171221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MGIQGNKAGT HEHDFLSLYA AAAAAKDAPL LLHHDSKAPP PPASQGNFLL KTHDFLQPLD  60
QKPGAPPEPS PLPASAAAES RHRQQQQQQV VHALPLPGGV GTFSISPAPV SVALPAPAVV  120
KSEPPFVLWG QPAATLQPGA RDLTVRVDRK GGSCSDGGTD QRPNTPRSKH SATEQRRRSK  180
INDRFQILRE LLPHNDQKRD KATFLLEVIE YIRFLQEKVQ KYEATFPEWN QENAKMLPWS  240
NMYFRSFWKN AQSKGQIPGD SPPDPSHFMR NGSSPGSNFT GKIDDNHNIV TSAAASGAQD  300
QAETDHMASG CYRSAETPAN ITNNAISQSQ PQWTGPSPVD DSAVNSEMLN NQQLAIDEGT  360
ISVSSNYSQE LLNSLTHALQ SSGVDLSQAS ISVQINLGKR AVKRPVAPSN SKEPADPASS  420
NELGHQLMML GAGADNLSHT TKRHKPGNS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G236200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341600.0BT034160.1 Zea mays full-length cDNA clone ZM_BFc0028P04 mRNA, complete cds.
GenBankBT0539890.0BT053989.1 Zea mays full-length cDNA clone ZM_BFc0097D18 mRNA, complete cds.
GenBankBT0693790.0BT069379.1 Zea mays full-length cDNA clone ZM_BFb0124F01 mRNA, complete cds.
GenBankEU9568110.0EU956811.1 Zea mays clone 1574597 transcription factor BIM2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308860.10.0transcription factor BIM2 isoform X4
TrEMBLA0A1B6QD410.0A0A1B6QD41_SORBI; Uncharacterized protein
STRINGSb02g027460.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-60BES1-interacting Myc-like protein 2