PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G225100.1.p
Common NameSb02g026570, SORBIDRAFT_02g026570
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 367aa    MW: 39197.5 Da    PI: 9.7309
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G225100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.85.7e-14287337555
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                           +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L  +  e+ ++
  Sobic.002G225100.1.p 287 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKELNQELERKQAEIMEM 337
                           79************************************9998877777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-11283347IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.806285336IPR004827Basic-leucine zipper domain
PfamPF001701.2E-11287338IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.2E-14287336No hitNo description
SuperFamilySSF579593.19E-10287335No hitNo description
CDDcd147072.46E-24287339No hitNo description
PROSITE patternPS000360290305IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEFKNWGSSS QRRPAVVVDE GQPLARQGSV YSLTFDEFQS ALGGAATGGG GGGSGGIPKD  60
FGSMNMDELL RSIWTAEETQ AMASASAAGA GAGMPLTPLQ RQGSSLTLPR TLSAKTVDEV  120
WRNLVRDEPP QAQVADGGGH HQQHRQSTLG EMTLEEFLVR AGVVRENPAP APPAPQPLTM  180
MPPRPVPVAP KSSAFFGNLP GADDAAAAAA LGFAPVGMGD LALIPPRAAA GMGGSAMAVQ  240
TAVNQQLDSG GKGYSDLSSP TEPLPFSFEG MIRGRRHGGG VEKVVERRQR RMIKNRESAA  300
RSRARKQAYT MELEAEVQKL KELNQELERK QAEIMEMQKN ETPEMLKDPF GRKKRLCLRR  360
TLTGPW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.214270.0shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves and embryos. {ECO:0000269|PubMed:10611387}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G225100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA). {ECO:0000269|PubMed:10611387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0363670.0BT036367.2 Zea mays full-length cDNA clone ZM_BFb0108N12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310056.10.0bZIP transcription factor TRAB1
SwissprotQ6ZDF31e-114TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBLC5X2A70.0C5X2A7_SORBI; Uncharacterized protein
STRINGSb02g026570.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70638147
Representative plantOGRP5401580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49720.26e-35abscisic acid responsive element-binding factor 1
Publications ? help Back to Top
  1. Kagaya Y,Hobo T,Murata M,Ban A,Hattori T
    Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1.
    Plant Cell, 2002. 14(12): p. 3177-89
    [PMID:12468735]
  2. Kobayashi Y, et al.
    Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors.
    Plant J., 2005. 44(6): p. 939-49
    [PMID:16359387]
  3. Kobayashi F,Maeta E,Terashima A,Takumi S
    Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings.
    Physiol Plant, 2008. 134(1): p. 74-86
    [PMID:18433415]