PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G220300.1.p | ||||||||
Common Name | Sb02g026150, SORBIDRAFT_02g026150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 370aa MW: 39124.8 Da PI: 7.3979 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.2 | 1.2e-17 | 187 | 241 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++ +++ +++ LAk+l+L rqV vWFqNrRa+ k Sobic.002G220300.1.p 187 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 241 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 126.3 | 1.3e-40 | 187 | 277 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq+++LEesF+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr Sobic.002G220300.1.p 187 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR- 274 69*************************************************************************************9. PP HD-ZIP_I/II 90 elk 92 +lk Sobic.002G220300.1.p 275 ALK 277 555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-17 | 176 | 237 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.91E-18 | 178 | 244 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.989 | 183 | 243 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-15 | 185 | 247 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.59E-16 | 187 | 244 | No hit | No description |
Pfam | PF00046 | 4.4E-15 | 187 | 241 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 218 | 241 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.4E-10 | 243 | 277 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.4E-24 | 243 | 286 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MELGLSLGET MADAGRDLVL GLGMGVVGVR REEEAAERGS RRDRDARREL EFGTTGWCGA 60 RSSPEPPAVR LTLLPGLVPR LGGLPWPPPP PPPPPSSETN RHLEASTTRG FDVNRAPSLS 120 VAGAAAAEED EEHDEAGAAA ASSSPNNSAG SFPTDFSAQG GQVAPGGGGD RGACSRASDD 180 DDGGSARKKL RLSKEQSAFL EESFKEHATL NPKQKLALAK QLNLRPRQVE VWFQNRRART 240 KLKQTEVDCE YLKRCCETLT EENRRLQKEL AELRALKTVH PFYMHLPATT LSMCPSCERV 300 ASNSSAPAVA PVAPASSPSP AATGIAASSA PSEQQRPSSF AALFSSPLNR PLVAAQAQPQ 360 PRPQAPASS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 235 | 243 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.4024 | 2e-85 | callus| embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G220300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036447 | 0.0 | BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds. | |||
GenBank | KJ726911 | 0.0 | KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462469.1 | 0.0 | homeobox-leucine zipper protein HOX11 | ||||
Swissprot | Q67UE2 | 1e-137 | HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11 | ||||
TrEMBL | C5X256 | 0.0 | C5X256_SORBI; Uncharacterized protein | ||||
STRING | Sb02g026150.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5209 | 33 | 63 | Representative plant | OGRP196 | 16 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 7e-55 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G220300.1.p |
Entrez Gene | 8081019 |