PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G206400.1.p
Common NameSb02g025080, SORBIDRAFT_02g025080
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 396aa    MW: 42970.8 Da    PI: 9.7846
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G206400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.95e-1347103155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  s+n  ++k+   g ++ +e Aa+a++ a++k++g
  Sobic.002G206400.1.p  47 SVYRGVTRHRWTGRFEAHLWDkNSWNEsQNKKGKQGAYDDEEAAARAYDLAALKYWG 103
                           78*******************8888888775555599******************98 PP
2AP252.11.7e-16146197155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Sobic.002G206400.1.p 146 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 197
                           89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-947103IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-1547113IPR016177DNA-binding domain
PROSITE profilePS5103219.13748111IPR001471AP2/ERF domain
SMARTSM003803.9E-1948117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-1348113IPR001471AP2/ERF domain
PRINTSPR003674.8E-64960IPR001471AP2/ERF domain
CDDcd000183.43E-22146207No hitNo description
PfamPF008471.6E-12146197IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18146207IPR016177DNA-binding domain
PROSITE profilePS5103218.36147205IPR001471AP2/ERF domain
SMARTSM003801.7E-25147211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-18147206IPR001471AP2/ERF domain
PRINTSPR003674.8E-6187207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MAKPRKNSAA ANNNNSSSNG AGDLTPRAKP KRTRKSVPRE SPTQRSSVYR GVTRHRWTGR  60
FEAHLWDKNS WNESQNKKGK QGAYDDEEAA ARAYDLAALK YWGPDTILNF PASAYEGEMK  120
GMEGQSREEY IGSLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYAT  180
QEEAAMAYDM AAIEYRGLNA VTNFDLSRYI KWLRPGAGGM AAAAAAAQNP HPMLGGLAQQ  240
LLLPPPADTT TTDGAGAAAF QHDHHGAEAF PLPPRTSLGH TPTTSALSLL LQSPKFKEMI  300
QRTESGTTTT TTTTSSLSSS PPPTPSPSPP RRSPAPTQPP VQAAARDASP HQRGFPEDVQ  360
TFFGCEDTAG IDVEALFFGD LAAYATPAFH FEMDL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G206400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0396320.0BT039632.1 Zea mays full-length cDNA clone ZM_BFc0035F11 mRNA, complete cds.
GenBankBT0551110.0BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds.
GenBankKJ7275880.0KJ727588.1 Zea mays clone pUT5448 AP2-EREBP transcription factor (EREB143) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460236.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-101AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1W0W5360.0A0A1W0W536_SORBI; Uncharacterized protein
STRINGSb02g025080.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-88ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]