PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G198500.1.p | ||||||||
Common Name | Sb02g024460, SORBIDRAFT_02g024460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 354aa MW: 36802 Da PI: 6.2384 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.9 | 8.9e-14 | 117 | 163 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++ +++k+L Sobic.002G198500.1.p 117 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVLDHVKEL 163 78*************************9.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.628 | 114 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.49E-12 | 117 | 166 | No hit | No description |
Pfam | PF00010 | 3.1E-11 | 117 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.07E-14 | 118 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.6E-14 | 118 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-13 | 120 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 4.6E-5 | 217 | 261 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MWEGGIVEHG SQEATHHQLL PWLGAAPFSE PAAVATGLGA AMGAYACGDG VGGLGLGHGG 60 VFGFGFDAVP PPQQQQQRAA EGSGKAVVSG LLGSLQAELG RMTAREMMDA KALAASRSHS 120 EAERRRRQRI NGHLARLRSL LPNTTKTDKA SLLAEVLDHV KELKRQTSAM MMATAAVGGD 180 DGGAGGRAHQ QLLPTEADEL SVDAGADGAG RLVVRASLCC EDRPDLIPDI VRALAALGMR 240 ARRAEITTLG GRVRSLLLIT AGSRGADQAG DGDGDDDDEE EEDGHRPANA PVHVDGERTA 300 SHRRHECIAS VQEALRGVMD RRTASSDTSS SGGGGGSIKR QRMNYGAQEQ CSV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G198500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971189 | 0.0 | EU971189.1 Zea mays clone 359116 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462365.1 | 0.0 | transcription factor bHLH30 | ||||
TrEMBL | C5XC82 | 0.0 | C5XC82_SORBI; Uncharacterized protein | ||||
STRING | Sb02g024460.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1918 | 38 | 98 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 8e-47 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G198500.1.p |
Entrez Gene | 8055813 |