PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G165800.2.p
Common NameSb02g020940, SORBIDRAFT_02g020940
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HB-other
Protein Properties Length: 398aa    MW: 44024.4 Da    PI: 7.0889
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G165800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.4e-071776956
                          HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
              Homeobox  9 keqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                          ++++ e+e+  ++  n  ps+   + LA+k            ++ +qV +WFqNrR+ ++
  Sobic.002G165800.2.p 17 PSEVAEMEARLQQlnNGIPSRGVLQTLADKFsasperagkvAIQPKQVWNWFQNRRYSHR 76
                          56677777777755477788888888888888888888888****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0039882IPR001356Homeobox domain
SuperFamilySSF466892.82E-91479IPR009057Homeodomain-like
CDDcd000868.38E-41476No hitNo description
PROSITE profilePS500719.7821478IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-61581IPR009057Homeodomain-like
PfamPF000464.6E-51776IPR001356Homeobox domain
PfamPF167199.0E-39135250IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGRPPSTTGA PAFRFLPSEV AEMEARLQQL NNGIPSRGVL QTLADKFSAS PERAGKVAIQ  60
PKQVWNWFQN RRYSHRAKST RAVPSPPAKM TPSGADHHQH AANASAFRAA QPSSVAAAHH  120
GASPTGKNPV EGVSVEFEAK SARDGAWYDV AAFLSQRLFE TGEPEVRVRF SGFGAEEDEW  180
INVRKCVRQR SLPCEATECV AVLPGDLILC FQEGKEQALY FDARVLDAQR RRHDVRGCRC  240
RFLVRYDHDS SEAFFYLATI TGEARLPKEI VPLRKVCRRP DTDYRLQILH AARVAATNAD  300
IHTPPKEIKV ELTSNDKSPT EQKPQKQHKM MDVNTDEVTM VSTLEQDETQ GKTVAPLPSS  360
TVETRNSSSD AVMKDAEASS VVEDDDEVQV VDKMKEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A1e-421372816134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-421372816134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-421372816134SHH1 SAWADEE
4iur_B1e-421372816134SHH1 SAWADEE
4iut_A1e-421372816134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-421372816134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-421372816134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-421372816134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-421372816134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-421372816134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G165800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0402810.0BT040281.1 Zea mays full-length cDNA clone ZM_BFc0075M16 mRNA, complete cds.
GenBankBT0876720.0BT087672.1 Zea mays full-length cDNA clone ZM_BFb0153J12 mRNA, complete cds.
GenBankKJ7276020.0KJ727602.1 Zea mays clone pUT5462 HB transcription factor (HB55) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310090.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ71e-116SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1W0W4J20.0A0A1W0W4J2_SORBI; Uncharacterized protein
STRINGSb02g020940.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Representative plantOGRP16411419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-106sequence-specific DNA binding transcription factors;sequence-specific DNA binding