PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G022600.1.p
Common NameSb02g002080, SORBIDRAFT_02g002080
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 682aa    MW: 70643.8 Da    PI: 7.3796
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G022600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.9e-16285344155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Sobic.002G022600.1.p 285 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 344
                           78*******************988886678446*************************98 PP
2AP247.44.9e-15389438355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  Sobic.002G022600.1.p 389 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 438
                           9***************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-16285353IPR016177DNA-binding domain
PfamPF008479.4E-13285344IPR001471AP2/ERF domain
CDDcd000184.85E-20285352No hitNo description
PROSITE profilePS5103219.203286352IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-16286353IPR001471AP2/ERF domain
SMARTSM003802.0E-29286358IPR001471AP2/ERF domain
PRINTSPR003675.4E-6287298IPR001471AP2/ERF domain
CDDcd000186.97E-23387448No hitNo description
SuperFamilySSF541711.57E-17387447IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-18388446IPR001471AP2/ERF domain
PROSITE profilePS5103219.19388446IPR001471AP2/ERF domain
SMARTSM003802.9E-33388452IPR001471AP2/ERF domain
PfamPF008471.0E-9389438IPR001471AP2/ERF domain
PRINTSPR003675.4E-6428448IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MTNNNGNGTN AAASSWLGFS LSPHMASAMD EHHHVQQQQQ HHHHHSLFFP SVTAAAAAAY  60
GLGGSDGGVA TSASPYYTPQ LASMPLKSDG SLCIMEALRR SDQPDHHGPK LEDFLGAAAA  120
QSQAMALSLQ DNPAAAASSF YYYGNGGGGG SGHQHHGGFL QPCADLYGGP SEASLVADDD  180
EAAAAATAMA SWVAARAGES GGVLSAAAAA AGHQHHHHAL ALSMSSGSLS SCVTAHPGAA  240
AADYGVVAAT ASASLDGGRK RGGAAGQKQP VHHRKSIDTF GQRTSQYRGV TRHRWTGRYE  300
AHLWDNSCKK EGQTRKGRQV YLGGYDMEEK AARAYDLAAL KYWGPSTHIN FPLEDYQEEL  360
EEMKNMTRQE YVAHLRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVSG NKDLYLGTFS  420
TQEEAAEAYD IAAIKFRGLN AVTNFDITRY DVDKIMASNT LLPGDLARRR KDDDPAAVIA  480
GADASNGGGV TTAAAAAALV QQAAAAAAAG AGGNHSASSS ETWIKVAAAA ALQAAGAAPR  540
DGNHHHHHHD VLSGEAFSVL HDLVVTAADG GNGNGNGGHH HHHVHNSAAT AQHMSMSSAS  600
SLVTSLGNSR EGSPDRGGGL SMLFSKPPAP APAASAHAAN KPMSPLMPLG SWASTAAASA  660
RAAAAAVSIA HMPVFAAWTD A*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}.
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G022600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882630.0BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308617.10.0AP2-like ethylene-responsive transcription factor ANT isoform X1
SwissprotQ84Z020.0CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1B6Q8S70.0A0A1B6Q8S7_SORBI; Uncharacterized protein
STRINGSb02g002080.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-123AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]