PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G488900.1.p
Common NameSb01g045740, SORBIDRAFT_01g045740
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 356aa    MW: 38887.4 Da    PI: 6.7749
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G488900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.68.9e-18124177356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  Sobic.001G488900.1.p 124 KKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 177
                           4568999**********************************************9 PP
2HD-ZIP_I/II127.84.6e-41123213191
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrl+ eqv++LE++Fe  +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+k++n++L +++++L++
  Sobic.001G488900.1.p 123 EKKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKADNDALLSHNKKLQA 211
                           69**************************************************************************************9 PP

           HD-ZIP_I/II  90 el 91 
                           e+
  Sobic.001G488900.1.p 212 EI 213
                           87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.1E-19114181IPR009057Homeodomain-like
PROSITE profilePS5007117.346119179IPR001356Homeobox domain
SMARTSM003891.3E-17122183IPR001356Homeobox domain
PfamPF000463.6E-15124177IPR001356Homeobox domain
CDDcd000862.95E-17124180No hitNo description
Gene3DG3DSA:1.10.10.602.9E-18126187IPR009057Homeodomain-like
PRINTSPR000311.8E-5150159IPR000047Helix-turn-helix motif
PROSITE patternPS000270154177IPR017970Homeobox, conserved site
PRINTSPR000311.8E-5159175IPR000047Helix-turn-helix motif
PfamPF021834.2E-14179218IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MRPMASNGMA SSPSPFFPPN FLLQMQQTPS DHDPQEQQHH HHHHHHHEHH LPAPPLHPHH  60
NPFLPSSQCP SLQDFRGMAP MLGKRPMYGA DVVAGGGDEV NGCGGGGGAN EDELSDDGSQ  120
AGEKKRRLNV EQVRTLEKNF ELGNKLEPER KLQLARALGL QPRQVAIWFQ NRRARWKTKQ  180
LEKDYDALKR QLDAVKADND ALLSHNKKLQ AEILALKGGR EAGSSELINL NKETEASCSN  240
RSENSSEINL DISRTPPSEG PMDPPPPHQH PHQHHHAAGG GLIPFYPSVG GGRPAAAAGV  300
DIDQLVLHTS ITPKLEPLGN GAAVQAAETA SFGNLLCGVD EPPPFWPWAD HQHFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171179RRARWKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G488900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9664900.0EU966490.1 Zea mays clone 294849 homeobox-leucine zipper protein HAT7 mRNA, complete cds.
GenBankKJ7285060.0KJ728506.1 Zea mays clone pUT6811 HB transcription factor (HB102) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465782.10.0homeobox-leucine zipper protein HOX21
SwissprotQ8S7W91e-141HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLC5WVY20.0C5WVY2_SORBI; Uncharacterized protein
STRINGSb01g045740.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-75HD-ZIP family protein