PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.001G485200.2.p | ||||||||
Common Name | Sb01g045420, SORBIDRAFT_01g045420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 572aa MW: 60714.6 Da PI: 7.8252 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.8 | 1.5e-14 | 265 | 324 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Sobic.001G485200.2.p 265 SQFRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDREEKAARAYDLAALKYWG 324 789******************544454478446*************************98 PP | |||||||
2 | AP2 | 33.2 | 1.3e-10 | 402 | 445 | 9 | 55 |
AP2 9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Sobic.001G485200.2.p 402 HHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 445 7789******988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.57E-20 | 265 | 334 | No hit | No description |
SuperFamily | SSF54171 | 1.83E-16 | 265 | 334 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.9E-28 | 266 | 338 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.795 | 266 | 332 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-15 | 266 | 333 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.9E-11 | 266 | 324 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.739 | 368 | 453 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-25 | 399 | 459 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-14 | 402 | 455 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-5 | 402 | 445 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.25E-19 | 403 | 455 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-14 | 403 | 453 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 572 aa Download sequence Send to blast |
MDMNNGWLGF SLSPSAGRGG YGDGGASASG DGGDGSCSSP AAAASPVPLV AMPLQPDGSL 60 HYTSAPDWRH GAAEANGPKL EDFMSVTCSS NNKRSSSSSS FYDRCSHAEQ ANKYHEVHDL 120 QPLSCGSYYH GSSGGGGNGI ALGINMNAPP CSGGGFPDHH HHHQFVSSHH GQYFLGAPLN 180 ASPPGAVPMY SAGGGGVGGS MSISGIKSWL REAMYVPPER PVAAAAALSL AVTDDVGAEP 240 PQLLPAAPMP PVHRKPAQTF GQRTSQFRGV TRHRWTGRYE AHLWDNTCRK EGQTRKGRQV 300 YLGGYDREEK AARAYDLAAL KYWGPSTHIN FPLSHYEKEL EEMKHMSRQE FIAHLRRNSS 360 GFSRGASMYR GVTRCRAALC SPIFAPHLLP FPTPQNFCVP LHHQHGRWQA RIGRVAGNKD 420 LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDISKYDVK RICASTHLIG GGDACRRSPT 480 QPPDAPALAI DAAGADRSSD APGGGDQAVS DNSDTSAGHR GAHLLHGLQY GHPMKLEAGE 540 GSSWMAAATA AAARPVAGVH QLPVFALWND C* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.001G485200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT055767 | 0.0 | BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021307150.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A1Z5SB69 | 0.0 | A0A1Z5SB69_SORBI; Uncharacterized protein | ||||
STRING | Sb01g045420.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-110 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.001G485200.2.p |
Entrez Gene | 8082026 |