PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G405200.1.p | ||||||||
Common Name | Sb01g038330, SORBIDRAFT_01g038330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | Trihelix | ||||||||
Protein Properties | Length: 206aa MW: 22681.9 Da PI: 10.7079 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 26.7 | 1.5e-08 | 19 | 87 | 2 | 64 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykki 64 W++ e+ Li+a ++ r r + l+ W++ ++++ + r f+r+ +qC+ + + l++ryk++ Sobic.001G405200.1.p 19 WSDGETARLIDAWGPVHLRRRPRGLRLEEWRAAARAVnahraaAGRRFNRTRVQCQTRVRTLKQRYKEE 87 ****************************************9999999********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.7E-16 | 18 | 104 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MNVCARSFPP PPESASGNWS DGETARLIDA WGPVHLRRRP RGLRLEEWRA AARAVNAHRA 60 AAGRRFNRTR VQCQTRVRTL KQRYKEELLK QPPSGWRHLP RLHAFLASPD DDSPPGIPAG 120 EPAVDAKQEV AEEAAGGGIG LADRWSVPRR PRNAAAGTGF CPGAVVVKLV EVYERVELAR 180 IAAEKVKMEM QQAQKAMIDA VKMEQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G405200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002468028.1 | 1e-140 | trihelix transcription factor ASIL1 | ||||
TrEMBL | A0A1Z5SAJ2 | 1e-146 | A0A1Z5SAJ2_SORBI; Uncharacterized protein | ||||
STRING | Sb01g038330.1 | 1e-140 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14753 | 12 | 13 | Representative plant | OGRP14124 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G405200.1.p |
Entrez Gene | 8084713 |