PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G355600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 272aa MW: 29546.2 Da PI: 6.2411 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.9 | 9.7e-05 | 39 | 87 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + erE+ Rd++N+ f eL +l + + + Ka iL+ +++ +++L Sobic.001G355600.1.p 39 KIHKAEREKLKRDHLNDLFVELGNMLEAD----RQNNGKACILTDTTRILREL 87 667889********************997....57788888888888887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.06E-11 | 34 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-8 | 36 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.417 | 37 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.35E-4 | 38 | 91 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MVPSERGSVA TAVSTPAADK LLHGPISGKK KCKKPSPRKI HKAEREKLKR DHLNDLFVEL 60 GNMLEADRQN NGKACILTDT TRILRELLVQ VDSLRKEHSN LQNESHYVTM ERNEMQDENG 120 MLRKEISELQ NELTMRGSGS PAGWGHGTAR SDPPLPHPTA VFSSEQAVQP ATIASIVFPL 180 QQPLVPSAMT GPPYAAPPLE LKLFPEVASA EGHEPCEDQE APNHVARPQA RYPTQSASWP 240 VSLFSGLPGM EDEQCSSSTT GSSKTASTDI E* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.2647 | 0.0 | callus |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G355600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067737 | 0.0 | BT067737.1 Zea mays full-length cDNA clone ZM_BFc0145G06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021307582.1 | 0.0 | transcription factor bHLH47-like | ||||
Swissprot | Q69V10 | 3e-82 | BH062_ORYSJ; Transcription factor BHLH062 | ||||
TrEMBL | A0A1B6QMX4 | 0.0 | A0A1B6QMX4_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G350312_P02 | 1e-176 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2481 | 38 | 84 | Representative plant | OGRP6793 | 8 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 1e-31 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G355600.1.p |
Publications ? help Back to Top | |||
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